Companilactobacillus farciminis: LF20184_10475
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Entry
LF20184_10475 CDS
T06098
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lfm
Companilactobacillus farciminis
Pathway
lfm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lfm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LF20184_10475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lfm03019
]
LF20184_10475
03009 Ribosome biogenesis [BR:
lfm03009
]
LF20184_10475
Enzymes [BR:
lfm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LF20184_10475
Messenger RNA biogenesis [BR:
lfm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LF20184_10475
Ribosome biogenesis [BR:
lfm03009
]
Prokaryotic type
rRNA helicases
LF20184_10475
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Helicase_RecD
CMS1
CobA_CobO_BtuR
Motif
Other DBs
NCBI-ProteinID:
ATO47140
LinkDB
All DBs
Position
complement(2137616..2139139)
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AA seq
507 aa
AA seq
DB search
MKFKELDLDPRLLSAVDEAGFEETTPIQAQTIPLVMTGADVIGQAQTGTGKTAAFGLPLL
NAVDTQSSDIQALIISPTRELAIQTQEELYRLGKEKKVKVQSVYGGSDIRRQIRALKNHP
QIVVGTPGRMLDHINRHTLKLHNVKTVVLDEADEMLDMGFVEDIESILSNVPNKHQTLLF
SATMPKPIMKIADKFMNEPEVVKIKSKELTADKIEQYFVKARDYEKFDLMTRLFDVQAPE
LALIFGRTKRRVDELTRGLQARGYNAEGIHGDLSQDKRTSVLRKFKAGKLDFLVATDVAA
RGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGHSGVSVTFVTPNEMGYLRTIENLTKK
RMEPLAPPTDKEVLKGQLESVKQDIKDTLEHDKHLDRFDSAVQELLAEYSPEDIARIFLS
ESIKDAETVPVKIAPERPLPSRKVSHSRSGHGRRGRYNGHRGGNNDHRRRRNNDRRDDKK
GGKRRENDNKRHGRSKKSFKIRTNLEK
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatttaaagaattagatttagatcccagattattgagtgccgtagacgaagccggt
tttgaagaaactacacctattcaagctcaaactattccactagttatgactggcgctgac
gttatcggtcaagctcaaactggtacaggtaagacggcagcctttggcttaccattgcta
aatgccgttgatactcaatctagcgatattcaagcattgattatctcaccaactagagaa
ttagctatccaaacacaagaagaattgtatcgtttgggtaaggaaaagaaagttaaggtt
caaagtgtttacggtggttctgatatcagacgtcaaatccgtgcactaaagaatcaccct
caaattgttgtcggtacaccgggtagaatgctcgatcatatcaaccgtcacactttgaag
ttgcacaacgtcaagacagtcgttcttgatgaagctgatgaaatgttagatatgggattc
gttgaagatatcgaaagtatcctttcaaacgttcctaacaagcatcaaacattattattc
tcagctacaatgccaaaacctatcatgaagattgctgataagtttatgaacgaaccagaa
gtagttaagatcaagtcaaaagaattgactgctgataagattgaacaatacttcgttaaa
gctagagattatgaaaaatttgacttgatgactcgtttattcgacgttcaagctccagaa
ttggctttgatctttggtcgtactaagagacgtgttgatgaattaactcgtggcttgcaa
gctcgtggttacaacgctgaaggtatccacggtgatttgtcacaagacaaacgtactagc
gtattgcgtaagttcaaggctggtaagttagacttcttagttgctactgatgtggctgct
agaggtttggatatttcaggtgtatcacacgtttacaactacgatattcctcaagatcct
gatagttatgttcaccgtattggacgtacaggacgtgccggacattctggtgtgtcagta
acttttgttacacctaacgaaatgggttacttacgtacaatcgaaaacttgactaagaaa
cgtatggaaccacttgctccacctactgacaaagaagttcttaagggacaacttgaatca
gttaagcaagatatcaaggatactttggaacatgacaagcaccttgatcgtttcgattca
gctgttcaagaattacttgctgaatattcaccagaagacattgctcgtattttcttgagt
gaatcaattaaggatgctgaaacagttcctgttaagattgctcctgaaagaccacttcca
tcaagaaaagttagtcacagtcgttctggccatggtcgtcgcggtagatataacggtcac
cgtggtggcaacaatgatcaccgtcgtcgtcgcaacaatgaccgtcgtgatgataagaag
ggtggcaaacgccgtgaaaatgacaacaaacgtcatggtcgcagcaagaagtcattcaag
atcagaactaatctagaaaaataa
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