Companilactobacillus farciminis: LF20184_11050
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Entry
LF20184_11050 CDS
T06098
Name
(GenBank) ATP-dependent helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
lfm
Companilactobacillus farciminis
Pathway
lfm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lfm00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
LF20184_11050
09124 Replication and repair
03420 Nucleotide excision repair
LF20184_11050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lfm03021
]
LF20184_11050
03036 Chromosome and associated proteins [BR:
lfm03036
]
LF20184_11050
03400 DNA repair and recombination proteins [BR:
lfm03400
]
LF20184_11050
Enzymes [BR:
lfm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
LF20184_11050
Transcription machinery [BR:
lfm03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
LF20184_11050
Chromosome and associated proteins [BR:
lfm03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
LF20184_11050
DNA repair and recombination proteins [BR:
lfm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
LF20184_11050
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
ResIII
PDDEXK_1
PhoH
HBB
Helicase_C
ACL4_C
WHD_TBPIP
RIIa
Motif
Other DBs
NCBI-ProteinID:
ATO47251
LinkDB
All DBs
Position
complement(2254820..2257192)
Genome browser
AA seq
790 aa
AA seq
DB search
MATKIGIRQLVEFVLRSGDLNETKNSQNTALNGARIHRRLQKQRGKNPDYQSEVYLKTEV
TMNDNEYLISGRADGLKITDKSILIEEIKTSDQPFEELSDNTLELYWGQVKVYGYLILKD
QPEFDHVTLRLTYFQVSTEKITTDEQVYSREELNAFFKNLIDEYEYWLVLRANLRKERNT
TIKELQFPFPKFRTGQHELAAAVYKTILYETRLFVEAPTGTGKTISTMFPAIKAMGEEKI
QRLFYLTAKQSTRRVAEEAIELMASKGLKLKSITLTAKDKIRFPEQDVPPEKDPYMIGYY
DRLKPALSDLLTNEDSITREVIEKYARKHQVDPFEFSLDASLFCDVIICDYNYLFDPLVY
LQRFFIEKDTDNFFLIDEAHNLVSRSRSMYSAQISDQKIAGLLKVAKKINTQPSADFQKQ
LKKVRRVFNQMKKVLKDDDLTEQITSDVPDKLLNTLSKFNDFMTDWMADQQPSDFLESAK
DYFFDSLTFVKIGALYDDTYKTRIVVEDKHLTVKQLCLDPSHFLDKSLNLGLGAVLFSAT
LSPMDYYQSVLGGKENSLAYQLPSPFPAQNQAIMVTRYVQTTYRQRPFSQDDIVESLHTL
VSGKTGNYLCFFPSYGYLKQIETLFEEKYPDISTVMQTSTMDNVARDEFLDKFQDNPDHT
LLGFCVLGGIFSEGIDLRGNKLIGVAIVSVGLPGLSVENNLIRDYYDQENGHGFEYAYQM
PGMNNVLQAAGRLIRSSHDKGIVLLLDQRFASFRYTQLFPNHWQNRQNLNSLEQLQQAVD
KFWKGASNED
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atggcgactaaaattggaattcggcaattagtggaattcgtcttgcgtagcggtgatttg
aatgagactaaaaatagtcaaaatacagccctaaatggtgcacgaattcatcgtcgatta
caaaagcaacgtggtaagaatccggactatcaaagtgaagtttatttaaagactgaagtg
acgatgaatgataatgaatatttgatttctggtcgtgctgatggtttgaagattaccgat
aaaagtatcttgattgaagaaatcaaaacttctgaccaaccgtttgaagagttgagcgat
aataccttggaattgtattggggacaagttaaagtctatggctacttgattttaaaagat
cagccggaatttgaccatgtgactttgcggttaacgtattttcaagttagcaccgaaaag
attacgacagatgagcaagtttatagtcgtgaagaattaaatgctttttttaaaaattta
attgatgagtatgaatattggttggttttacgcgctaatttacgtaaagaacgtaatact
acaatcaaagaattacagtttccttttcccaaatttcgtacgggccaacatgaactagca
gcagcagtttataaaacgattttgtatgagacgaggttattcgttgaagcaccgacgggt
actggaaagacgatttcaacgatgtttccggctattaaggcaatgggggaagaaaagatt
caacgcctgttttacttaacagctaaacagagcacacgacgagttgcagaagaagctatc
gaattgatggctagtaagggtttgaaactaaaaagtattacattgacggcaaaagataag
attcgttttcctgaacaagatgttccaccagaaaaggatccatatatgattggttattat
gaccgtttaaagccggctttatcagatttgttgaccaatgaagatagtattactcgcgaa
gtgattgagaaatacgctaggaagcaccaagttgatccctttgaattttcgctagatgct
tcgttgttttgtgacgtaattatttgcgattataactatttattcgatccattggtgtac
ttgcagcgtttcttcatcgaaaaggataccgacaatttcttcttgattgatgaagcacat
aaccttgtcagtcgttctcgttcgatgtattcggctcaaatcagcgaccaaaagattgcc
ggtttactaaaagtggccaagaagatcaatacgcagccgagtgctgattttcaaaagcaa
ctaaagaaggttcgacgagtcttcaatcaaatgaaaaaagttttaaaagatgatgatttg
acggaacagatcacttcagacgtacctgataaattgttgaacactttgagtaaatttaat
gattttatgactgattggatggcggatcaacagccttcagattttcttgagagtgccaaa
gattacttctttgatagtttgacctttgtcaaaattggagcgttatatgacgatacgtat
aagacaagaatcgtggttgaagataaacatctgactgttaagcaattatgcctagatcca
agtcactttttagataaatctttgaatttaggtttaggggcagtgctattctcagctacc
ttatccccgatggactattatcaaagtgttttgggcggtaaagaaaatagtttggcatat
caattgccatcgccatttccggcacaaaaccaagccattatggtcacacgctacgttcag
acgacctatcgacaacgaccttttagccaagatgacatcgttgaaagtttgcatacgttg
gtcagtggtaagacgggtaattatctgtgctttttcccttcttacggctatctgaaacag
attgaaacactctttgaagagaaatatcccgacatttcgaccgttatgcaaactagtacg
atggacaatgttgctcgtgacgaatttttagataaatttcaagataatccagatcacacg
ctattgggattctgtgttcttggaggaattttttcggaaggaattgacttacgaggcaac
aagttgattggcgtagcaatcgttagtgttggattacccggacttagtgtggagaataat
ttgattcgtgattactacgaccaagagaatggacacggttttgaatatgcgtatcaaatg
ccgggaatgaataacgttttgcaggccgcaggtcgactgatccgaagtagtcatgataaa
ggaattgttttgttgttggatcagcgttttgctagtttccgttacacacaacttttcccc
aatcattggcaaaatcgacaaaatttaaattcacttgagcaattgcaacaagctgtggat
aagttttggaagggagcttcaaatgaagactaa
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