Limosilactobacillus frumenti: LF145_01320
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Entry
LF145_01320 CDS
T06870
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lfn
Limosilactobacillus frumenti
Pathway
lfn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lfn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LF145_01320 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lfn03400
]
LF145_01320 (mfd)
Enzymes [BR:
lfn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LF145_01320 (mfd)
DNA repair and recombination proteins [BR:
lfn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LF145_01320 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
AAA_16
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
UB2H
TCAD7
CdvA
Motif
Other DBs
NCBI-ProteinID:
QFG72098
LinkDB
All DBs
Position
303250..306771
Genome browser
AA seq
1173 aa
AA seq
DB search
MHLVDFLTRTKEYQQIQRAATPRQNQLVTGISGSAKTLLLTAVQRHEQRPQLVITDSLFH
LQEVATDLENLLPEGTVYQFPVEEVLAAEMATSSPNYRLQRVLALHALQSKQPVIVVAST
AGLRRPLLSPEHFQQAMLDLTVGGECDPETAADQLSSMGYRRQKMVLRPGDFAIRGSIID
VYALNTDDPVRIDLFDTEIDSLRYFDASTQRSLKNVQAVSILPATDFILPTTEFNRLTEQ
MTNYYHQLQSAVTSDDEKEQLDHRYQPLLTDLSQHQLPNAMLEYTDMVYPQASSLLDYLP
ANGILYLDDWTRIKQTTDQMTKEDHGWLHDQVDHHQLLTIPHLSHDIDKLVKNDSHAHEF
WALFKKGMGQVRFAAMTELTTRTMQRFFGQMPLLKTEMQRWIDQGRTVLLMADSKQRRDS
IAQTMADFGIQVTATTIDSLQQNVVQLVPTNLATGFELPVTGLVIITEGEMFKQVKKRRI
RPQKLANAERLKSYTDLKPGDYVVHVNHGIGIFSGIRTMKVDGVHQDYMVINYRNNAQIF
VPVTQLNLVQKYVSSESKTPHINRLGGNEWAKTKRRVASKVEDIADELVDLYAKRETEKG
FAFPHDDYLQEQFDANFPYTETRDQLRSIKEVKADMEKDKPMDRLLVGDVGYGKTEVALR
AIFKAVEGGKQVAFLVPTTVLAQQHYDTMKKRFEGFPIEIALMSRFRTPKQLKETDAGLA
DGSIDVVVGTHRILSKDVHFKDLGLLIVDEEQRFGVKHKEKLKQLKSNVDVLTLTATPIP
RTLHMSMLGVRDLSVLETPPAGRYPIQTYVMEQNSGAIRDGIIREMQRGGQIYYLHNRVS
DIEETVAKLQQLVPEARIGFINGQMSENELETVLYEFIQGDYDVLVTTSIIETGVDIPNV
NTLFVENADRMGLSQLYQIRGRIGRSNRIAYAYFMYQPNKVLTELGEKRLAAIRDFTELG
SGFKIAMRDLSIRGAGNLLGKQQHGFINSVGYDLYSSMLSEAVAEKQGKHKQTKSDTEVE
LGVEAYLPDDYVNDQRQKIELYKTIHSAASDDELLDIQGDLIDRFGEYPRAVGNLLLISQ
LKLHADLGLVKEIKRQRDQITITWTMTGSQRLTARDIIKALANTKFKATLGEQDQLLSVR
LVIQPKMTEDDWLHQLLKLMTSLGDTVQSVKQK
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgcacttagttgactttttaacccgaactaaggagtaccagcaaattcaacgggcagca
acaccacgtcagaatcaattggtaactggtatttccgggtcagcgaagacactgctatta
acggcggttcaacggcatgaacaacgaccacagttagtgattaccgatagcctctttcac
ttacaagaagtggcaactgatttagaaaacttactgccagagggcactgtttatcagttt
ccagtggaagaagttttagctgctgaaatggccactagttcgcccaattatcggttgcaa
cgcgttttagcccttcatgctcttcaatcgaaacagccggtgattgtagtggcttcgact
gctgggttacggcggccgttactctcaccagaacacttccagcaagcgatgctggattta
acagttggtggtgagtgtgatccggaaaccgcagctgaccagctgagttcaatggggtac
cggcggcaaaaaatggttttacggccgggcgattttgcaattcgaggatcgatcattgat
gtttatgctttaaataccgatgacccggtccggattgacctctttgacaccgaaattgat
tcccttcgttactttgacgctagcactcaacgaagcttgaaaaatgtccaagcagttagt
atcttgccggcaactgactttatcctgccaacgactgagtttaatcgactcacagaacag
atgactaattattatcaccagttgcaatcagcagtaacgagtgatgatgaaaaggaacag
cttgatcatcgctaccaaccgttgttaacggaccttagtcaacaccagctgccgaatgca
atgcttgaatacaccgatatggtttacccccaagcatcatcattgcttgattacttacca
gcaaacgggatactataccttgatgactggacacggattaagcaaacaacggaccaaatg
acaaaggaagatcatggctggcttcatgaccaggttgaccatcaccagctattgaccatt
ccacatttgagtcatgacattgacaagctggtgaagaacgattcacatgcccatgagttc
tgggccctgttcaaaaagggaatgggccaagttcgctttgcggcgatgaccgaattgaca
acgcggacgatgcaacggttctttggccagatgccattactaaaaaccgagatgcaacgt
tggattgaccagggacgcacggttctcctcatggctgatagtaaacagcgccgggattca
attgcgcaaacgatggctgactttggtatccaggtaacggcaaccacgattgatagtttg
caacagaatgttgttcaactggttcccactaatttagcaaccggttttgaactgccggtg
actggcttagtaatcatcactgagggtgagatgtttaagcaggttaagaaaagaagaatc
cgtccccagaaacttgccaatgcagaacgcttgaagtcgtatacggatcttaagcctggc
gactatgttgttcacgttaatcatgggattggaatttttagtggcattcgaacgatgaaa
gttgatggtgtccatcaagattacatggtcatcaactaccgcaataatgcccagatcttt
gtgccagttactcagcttaatttggttcaaaagtatgtttcttcagaatcgaagactcca
catattaatcgtctgggtggcaatgagtgggccaaaactaaaagacgagttgcttcgaaa
gttgaagatatcgctgatgagttagttgacctgtatgccaagcgggaaacggaaaagggt
tttgcctttcctcatgacgactacttgcaagaacagtttgatgcgaacttcccgtataca
gaaacccgggaccagttgcggagcattaaagaagttaaggctgatatggagaaggataag
cctatggaccgactattggtcggggatgttggctacggtaaaactgaagtggcattgcgt
gccatctttaaggctgtcgagggtggtaaacaggtagcctttcttgttcctacgacggtg
ttagctcaacaacactatgacacaatgaagaaacgctttgaaggcttcccaattgagatt
gctctgatgtcgcgcttcaggactcctaagcaattgaaggaaactgatgccggattagca
gatggctcaattgacgtggttgttgggacccaccggattttatctaaggatgtccatttt
aaagaccttggtctcctgattgtcgatgaagagcaacgctttggggtaaaacataaagag
aaactgaaacaacttaaaagcaacgtggatgtattgaccttgacagcgactcccattccg
cggactctccatatgtccatgctgggtgtgcgggatctctctgtattggaaactcctcct
gctgggcggtaccctattcagacttacgtgatggaacaaaacagtggggcaatccgtgat
ggaattatccgtgaaatgcaacggggtgggcagatttattacttgcacaaccgagtttca
gatatcgaagagacggttgccaaattgcaacagcttgttcctgaagcccgaattgggttc
atcaatggtcaaatgagtgaaaatgagctcgaaacggttctttatgagttcattcagggg
gactacgatgttctcgttactacttcgatcattgaaaccggagttgacattccgaacgtt
aacactctattcgttgaaaatgccgaccggatgggactttcacagttgtaccaaatccgg
ggacggataggccggagcaatcggattgcatatgcttacttcatgtatcagcccaataaa
gtactaaccgaactcggtgaaaaacggctagcagcaattcgtgactttaccgaattaggc
tctgggttcaaaattgcaatgcgcgacttgtcaatccgtggtgcgggtaatctgctaggc
aaacagcagcatggctttattaattctgtagggtacgacttatattcctccatgctttct
gaagccgttgcggaaaaacagggtaagcataaacaaactaagtccgatacagaagttgaa
ctcggtgttgaagcatacttgccggatgactacgttaatgaccagcgacaaaaaattgaa
ttgtataagacgattcatagtgctgcgagcgatgatgaattgctcgatattcagggtgat
ttgattgatcgctttggcgagtacccgcgggcagtgggtaatttactgttaattagccag
ttgaaactgcatgctgacttaggcttagtcaaagaaatcaaacggcaacgggatcaaatt
acaattacttggaccatgacaggtagtcagcgattaacggcccgcgatattattaaggcc
cttgctaacacaaaatttaaagccactttaggtgaacaggatcaactattgagtgttcga
ttagtgatccagccaaaaatgactgaggatgattggcttcatcagctcttgaagcttatg
acttccttaggggatactgtgcaatcagtcaagcagaaataa
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