Limosilactobacillus frumenti: LF145_03970
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Entry
LF145_03970 CDS
T06870
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
lfn
Limosilactobacillus frumenti
Brite
KEGG Orthology (KO) [BR:
lfn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lfn03032
]
LF145_03970 (topA)
03400 DNA repair and recombination proteins [BR:
lfn03400
]
LF145_03970 (topA)
Enzymes [BR:
lfn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
LF145_03970 (topA)
DNA replication proteins [BR:
lfn03032
]
Prokaryotic type
DNA Topoisomerases
LF145_03970 (topA)
DNA repair and recombination proteins [BR:
lfn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
LF145_03970 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
zf-C4_Topoisom
Toprim
Zn_ribbon_recom
TF_Zn_Ribbon
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
QFG72547
LinkDB
All DBs
Position
822098..824218
Genome browser
AA seq
706 aa
AA seq
DB search
MATSTKKTTKRKTTRRRAKPKKKLVIVESPSKAKTIGRFLGRSYKVVASLGHVRDLPKSR
MGVDIEHNYQPDYISIRGKGDVIKELRKDAKNAKAVYLASDPDREGEAIAWHVSNILKLD
DNDKNRVTFNEITKDAVKEAFKEPRSINMDLVDAQQARRVLDRLVGYSISPILWKKVKRG
LSAGRVQSVALNLIIQRENEIRDFKPEEYWTIDAAFQQGKDKFKATFYGQNGKKVALHNN
QDVQKILRKVDKKQDFEITKVVRRERKRQPQPPYTTSTMQQDANRRLNFRTRKTMMAAQM
LYEGIDIKQGSPVGLITYMRTDSTRIASIAKHEASKFIHEKYGSEYAAIKPIKGKLPEGA
QDAHEAIRPTSVYRTPAEMKQYLTNDQYKLYNLIWSRFVASQMTPEIIDTMNVNLEQNNV
DFRANGSKVKFAGFTKVYKRGKEQDNLLPDLQEGEQARMISDDPAQHFTQPPARYTEAAL
IKTLEENGVGRPSTYAPTLDTIQRRYYVRLVARHFEPTELGQIVNKIIVKQFPDIVNVKF
TADVEGELDQVEEGKRNWVKVVDSFYKPFSKEVSAAENAVAKIEMKDELAGVDCDICGAP
MVVKMGRYGKFYACSRFPNCRNTKAIVHDTGITCPKCGKGTVVERKSKKNRTFYGCSRYP
DCDFVSWDRPVGRNCPKDGHYLVIKKIKGGTQVVCPNGDYKEQPQK
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccagtactaaaaaaacaactaaacgaaagactacgcggcggcgtgctaagccg
aagaaaaaattagtaattgtggaatcaccttcaaaagcaaagacgattggtcgttttctg
ggccggtcatataaagtcgttgccagcttaggccacgttcgggatttacctaagagtcga
atgggagttgatattgaacataattatcagccggactacatttcgattcgtggtaagggt
gatgttattaaagaactgcggaaggatgctaaaaatgctaaggctgtctacctggcatct
gaccccgatcgtgaaggggaagcaattgcatggcatgtttctaatattctgaaattagat
gataatgataaaaaccgggttacctttaacgaaatcactaaagatgccgttaaggaagcc
tttaaagaaccacgttctattaacatggacttggtcgatgcccagcaagcacggcgggtg
ttagaccgcctcgtggggtattcaattagtccaatcctgtggaagaaggttaagcggggc
ttatcggcaggacgtgttcaatcagtagcattaaacctaattattcaacgggaaaacgaa
attcgcgatttcaagcctgaggaatactggacgattgatgcggccttccagcaagggaag
gataagtttaaggccactttttatggtcaaaatggtaaaaaggtggctctgcacaacaat
caagatgtccaaaagatcttgcgaaaagttgataagaaacaggacttcgagattaccaag
gttgtccgtcgtgaacggaaacgccaaccgcagcctccatatactacttcgacaatgcag
caggatgctaaccgtcgtttgaatttccggacccggaagacaatgatggctgcacaaatg
ttgtatgaaggaattgatattaaacagggttcaccggttgggctgattacttacatgcgg
actgattcaacgcgaattgcctcaattgccaagcacgaagcttcaaagtttattcatgag
aagtatggtagcgaatatgcggccattaaaccaattaaaggtaaactccctgaaggggca
caggatgcacacgaagctattcggccaacatctgtctaccggactccagcagaaatgaag
cagtacctgactaatgatcaatacaagttgtacaatttgatctggtcgcggtttgttgct
agccagatgactccggaaattattgacaccatgaacgtcaatctggaacaaaataatgtg
gatttccgggcaaatgggtctaaggtaaaattcgctgggtttaccaaggtttataagcgt
ggtaaggagcaggacaatcttttgcctgatttgcaagagggtgaacaggcacggatgatt
agcgatgatcctgcccagcactttacccaaccgccagctcgttatacggaagcagcctta
attaaaaccctcgaagaaaatggggtcggtcggccttccacgtatgccccaactttggac
acaattcagcggcgatattacgtccgcttagttgcccgtcatttcgaaccaacggaactt
ggtcaaattgtcaataaaatcatcgttaagcagttcccggacatcgtaaatgttaaattt
acggcggacgttgaaggtgagttggaccaggttgaagaaggtaaacgaaactgggtcaaa
gttgttgatagcttctacaaaccattctccaaagaagtctcagcggcagaaaacgctgtt
gccaaaattgagatgaaggatgaactagcaggggttgattgcgacatctgtggtgcccca
atggtcgttaaaatgggacggtatggtaagttctatgcttgctcgcgttttccaaactgt
cggaataccaaggctatcgtccatgacacggggattacctgtccaaagtgcggcaagggg
accgttgtggaacgcaaatcaaagaaaaatagaactttctatgggtgttctcgttatcca
gattgtgactttgtatcgtgggatcgaccggttggaagaaactgtcctaaagatggtcac
tacctcgttattaagaagattaagggtggcacccaagttgtctgtccaaatggtgattat
aaagagcagccacagaagtaa
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