Limosilactobacillus frumenti: LF145_04290
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Entry
LF145_04290 CDS
T06870
Name
(GenBank) excinuclease ABC subunit UvrA
KO
K03701
excinuclease ABC subunit A
Organism
lfn
Limosilactobacillus frumenti
Pathway
lfn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lfn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LF145_04290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lfn03400
]
LF145_04290
DNA repair and recombination proteins [BR:
lfn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LF145_04290
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LF145_04290
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_DNA-bind
SMC_N
AAA_21
nSTAND1
DnaJ_CXXCXGXG
AAA_15
AAA_29
AAA_16
DUF463
zf-C3HC4_5
nSTAND3
cobW
DUF7368
NRDD
DUF5679
NMDAR2_C
Motif
Other DBs
NCBI-ProteinID:
QFG72603
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Position
complement(881914..884436)
Genome browser
AA seq
840 aa
AA seq
DB search
MIKTKESTIPAQIEVRGGRVHNLKNIDVNIPLHQFVAISGLSGSGKSSLAMGILYEEGSR
RYLEALSTYTRRRIKLGAQAQVSSVKHIPSALALHQRPSVPSERATVGTMSELFNVIRLI
FSRLGQPVCPNGHRLKPSLKIAQAMSKSGDEMGQLTCPVCGAKFYAYSAEDFAFNSDGAC
TNCQGTGKVRELDEDKLIGDPNLSLADGAVASWHLPGRNFMPQVAEAAGVRINIPYKNLT
DKEKEFVLNGPSKKYKMDFASSTGRVFHDFNALYENAHRAVLESARTSKSARAQERIKEF
FHFSTCPVCHGTRLKPELLKQLAGGLNIAEVTNLTLAELPAWQKKVMDELPADMHKLGTS
VFKQFEDNLRPLLELGLDYLSLSRNGNTLSTGELQRIQLARTLRTETTGVLYVLDEPSIG
LHPDNVAGLLHVFKELVAQGNSLVVVDHNIDIIAAADWIIEIGPGSGAEGGNIIAQGTPN
QLRQTSDSLIGPFLNGQAQIKVRQTQPVPTKTNTEIKINHYFNLDNVGVKIPTNRLTAVT
GFSGAGKTSLILDSLVPALQRQEKGEPLPKQVDSLTTSLEHVVSVDATPVGKSTRSTVAT
YTSIMDNLRRLYARQPLAKQKHYTASYFSYNNKQGACPNCGGTGIVTLDIQYLPDMQQTC
PVCQGDRYNNDIQKVQWNGRSIVDVLNLDVRHAIPVFAKVPKIERELKLLDEVGLGYLHL
GESTPSLSGGEAQRLKLVKHLSHRQETTLFVFDEPSVGLHPLDVQTLLQVMQRLIDKGAT
IIMITHDVNLMVNADYLIDMGPRGGNKGGQIVAEGQPDELVKKPTSLTTQYLAEFEHRFN
NT seq
2523 nt
NT seq
+upstream
nt +downstream
nt
atgatcaagacaaaagagagtaccatcccggcccagattgaagttcgcggtggtcgggtt
cacaacttgaagaatattgatgtcaatattccgctccaccaatttgttgctatttcggga
ttatcgggttccggtaaaagttcattggcaatgggcatcctttatgaagaagggtcgcgt
cgctatctagaagctttgtcgacatatacacgacggcggatcaagttgggggcgcaggcg
caagtgtcgtcagttaagcatatcccatcagcattagcgctccaccagcgaccatctgtg
ccttccgaacgcgctaccgtggggacaatgagcgagctcttcaacgttatccgcctgatc
ttctctcggctcggtcaaccggtctgcccaaatggccaccgtttaaagcccagtttaaaa
attgctcaggcaatgagtaaatcaggtgatgaaatgggtcaactaacctgtcccgtgtgc
ggtgcaaagttctatgcatatagtgcggaagactttgcttttaattccgatggggcctgc
actaattgtcaggggaccgggaaagttcgtgaactagacgaagacaagctaattggcgat
cccaacctgtcacttgctgatggagccgttgcatcttggcacttgccagggcgaaatttc
atgccgcaagtagcggaagcagcgggggtccggattaatattccttataagaatctaacc
gataaggagaaggaatttgttctcaatggtccaagcaagaagtacaagatggattttgct
tcaagcaccggccgtgttttccacgactttaatgccttatatgaaaatgcccaccgcgcc
gttctagagtcagcgcggacgagtaagagtgctcgtgctcaagaacggatcaaggagttt
ttccacttctccacctgtcctgtttgtcatgggacacggttaaagccagaattgttgaag
cagttagccggtggattgaatattgcagaagtaactaacctgactctggcggaactccca
gcatggcaaaagaaggtcatggatgagttgccagctgatatgcacaagttagggacttcc
gtgttcaaacaatttgaagataatctccgtccactgttggaattggggttggactacctc
tccctgtcacggaacgggaataccttatcaactggggaacttcaacggattcagttagcg
cggactctacggacggagacaaccggggttttgtatgtgcttgatgaaccttctattggt
cttcacccagataatgtggctggtttactccacgtttttaaggaacttgttgctcaaggg
aactcattagtcgtggtagaccacaacattgatatcattgctgcagctgattggattatt
gaaattggtccaggatccggggcagagggtggcaacatcattgctcagggcacgccaaac
caattacgccagacgagcgactccctgattggtccatttttgaatggtcaggctcagatt
aaggttcggcagacgcaacctgtgccaacaaaaacaaatacggaaattaagattaaccac
tactttaacttggacaacgtcggcgtcaagattcccacaaaccgcttaacggcagtaaca
ggcttctctggcgctggaaagactagtctgattcttgattcgctggtacctgccctgcag
cggcaagagaagggggaaccattgcctaaacaggttgattcattgacaacttcattagag
catgttgtttcggttgatgcgacaccggtggggaagtctactcggtcaacagtggctacg
tacacgagtatcatggataatttacggcggctatacgctcgccaaccactggctaagcaa
aagcattacacggcttcatacttctcttacaacaataaacaaggcgcttgtccaaactgt
ggcggtactggaatcgttacgcttgatattcaatatctgccggatatgcaacagacttgt
ccagtttgccaaggtgatcgttataataatgatattcaaaaggtccaatggaatggccga
tcaattgttgatgtattgaatctcgatgtccgccatgccattccggtctttgcaaaggta
ccgaagatcgaacgagagttgaaactattggatgaagttggtctcggttacctccacctt
ggtgaaagtacgccttcactatccggtggggaagcccaacgtctgaaactggtaaaacac
ttgtcccaccggcaagaaacaaccctctttgtctttgatgaaccatccgtcggtctgcac
ccgttagacgtgcaaacccttttgcaagttatgcagcgattgattgataagggcgcgaca
atcatcatgattacccatgatgtgaacttaatggtcaatgctgactacctaatcgatatg
ggcccacgtggcggtaacaaaggtggtcaaattgttgcggaaggacaaccagatgagtta
gtaaagaaaccaacaagtttgacgactcagtatttagcagaatttgaacaccggtttaat
taa
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