Lactococcus formosensis: LMK00_00040
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Entry
LMK00_00040 CDS
T08654
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lfo
Lactococcus formosensis
Pathway
lfo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lfo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LMK00_00040 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lfo03400
]
LMK00_00040 (mfd)
Enzymes [BR:
lfo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LMK00_00040 (mfd)
DNA repair and recombination proteins [BR:
lfo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LMK00_00040 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
MFD_D3
AAA_22
RecG_dom3_C
AAA_16
AAA_5
Motif
Other DBs
NCBI-ProteinID:
USJ20422
UniProt:
A0A9Q9D6X2
LinkDB
All DBs
Position
11703..15188
Genome browser
AA seq
1161 aa
AA seq
DB search
MKINEFFDQNHDLQSWQRSFAKAERTLLTGLSGTAQAMVMANAYENNPDKYVIVTDNQYH
ANELYDELTHLVEDEKVYQFFSDDNVYAEFAIASKDRTAYRLEALNFLLDVQKTGFLVVP
FMALRSILPQPYNFQENYLLLAQGDEFDMENLLAILTSAGYEKTQRVMVPGEFSQRGDIV
DIYPLDAAQPLRLEFFGDEVDTIRTFDSETQRSLKNMDQIEIYPASDFILMPWEFDQGVK
KLIAQLENVSDPTAQSYFEEVIAAAKNHYYHKDLRKFAEYFYEKPASLLNYFPKNIQIFI
DDFQKINEANNKTEQELAEFIVSEKSMGRSFEGQSYLLDVISKLRSHKPASFFSNFQKGL
GNIKFDALYNFNQHSMQQFFGQMELFYTEVDRFVKQGFTVVLAVSSEKLRTELQKLDLEL
QVVSTEEIQKGKVNLLNLTLNNGFNFIDEKLVVITESEIFGKARKKKTRRLNITNAERLK
DYNELEVGDYVVHKNHGIGKYLGIQTIEVSGMHRDYLTIQYQNGDTISVPVDHLNLLSKY
SAAEGKTPKINKLNDGRWRKTMSTVSKQVEDISEDLIKLYSARQALKGHAFSLDDVNQEE
FDNGFAYPETADQMRSINEIKKDMELERPMDRLLVGDVGFGKTEVAMRAAFKAINDSKQV
AVLVPTTVLAEQHYNNFMERFVNFGVNIAVLSRFQTKAQQTEILDKLKKGRVDLIIGTHR
LLSKDVEFLDLGLMIIDEEQRFGVKHKERLKELKTQVDVLTLTATPIPRTLHMSMLGIRD
LSVIETPPTNRYPVQTYVMETNYGVVRDAVLREISRGGQVYYIHNRVDSIEQKVSQLEEL
IPEARIGYIHGQMTEIQLENTLMDFINNEYDVLVATTIIETGVDIPNANTLFIENADMMG
LSQLYQLRGRVGRSNRVAYAYFMYKPEKILSEVSEKRLEAIKGFTELGSGFKIAMRDLSI
RGAGNLLGAEQSGFIDSVGFELYSQLLEEAVHKRMGGDKVKNKTNAEIILGLDAFIPSYY
IGDERQKIEIYKRIRQVDTRKNYEELQDEMMDRFGEYPDEVAYLLEIGLLKTFADNALVE
KIEKNKFDVLLTMAKSANTMYDPQEYFEALSETTLKASVGEKLGKMTFRFKIENRKDVVL
LREIMNFTEKLSELRDNHEKE
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgaaaataaacgaattttttgatcaaaaccatgatttacagtcatggcagagaagtttt
gcaaaagcagagcgtacgcttttaaccggtctttccggaactgctcaggcgatggttatg
gctaatgcttatgagaacaatccagataagtacgtgattgtcactgataatcaataccac
gccaatgaactttatgatgaactgactcatcttgttgaagacgagaaggtttaccaattt
ttttcagatgacaatgtttatgctgagtttgcgatagcaagtaaagaccggacagcatat
cgtcttgaagctctaaatttcctgcttgatgtacagaaaacaggctttttagttgttcct
ttcatggctttacgttcgatcttgccccagccttataatttccaagaaaactatcttctt
ctggctcaaggcgatgagtttgacatggaaaacctactcgctattttaactagcgcaggt
tatgaaaagacacagcgcgtgatggtaccaggagaattttcacaacgtggcgacatcgtg
gatatttacccactagatgcagctcaacctttaaggttagaattttttggcgatgaagta
gatacgattcgtactttcgacagtgaaacacaacgttctctcaaaaatatggatcagata
gaaatatatccagcgagcgactttattttaatgccctgggaatttgatcaaggggtaaaa
aaattaattgctcaactagaaaatgtatcagatcctacagcgcaatcttattttgaagaa
gttattgcagcagcaaaaaatcattactatcataaagatttgcgcaagtttgcagaatat
ttttatgaaaaacctgcctctcttttaaattattttccgaaaaatattcaaattttcatt
gatgattttcaaaaaattaacgaagcaaacaataaaacagaacaagaacttgcagaattt
atcgtttctgaaaaaagtatgggccgttcttttgaggggcaaagctatcttttagatgtt
atttctaagttacgttctcacaaaccagcaagttttttctccaattttcaaaaaggttta
ggtaatataaagtttgatgctttatataattttaatcaacattcaatgcaacagtttttc
ggacaaatggaacttttttatacagaagttgacaggtttgtaaagcaagggtttacagtt
gtcctagctgtatcttcagagaaactacgcacggagcttcaaaaattagatttagagctt
caggttgtatctactgaagaaattcaaaaaggaaaagtaaaccttctgaatttaacactt
aacaatggttttaattttattgatgagaaacttgttgttattactgagtcagaaattttt
ggtaaagcgcggaagaaaaaaacacgtcgcttaaatattaccaatgcggaacgcctaaaa
gattataacgaacttgaagttggagactacgttgtccataaaaatcacgggattgggaaa
tacctagggattcaaaccattgaagtatcaggcatgcaccgtgattacttgacgattcaa
tatcagaatggtgatacgatctcggttccagtagaccatctgaatctattaagtaaatac
tcggcggcggaggggaaaacccccaagataaataaacttaatgatggtcgttggcgtaaa
actatgtcgactgtaagtaagcaagtcgaagatatttctgaagacctgataaagctctat
tcggcaagacaagctttaaaaggtcatgctttttctttggatgatgttaatcaggaagaa
tttgacaatggctttgcctacccagaaactgcagaccagatgcgctcaatcaatgagatt
aaaaaagatatggaacttgaacgtccgatggatcgactattggttggagatgtaggcttt
gggaaaactgaggttgcaatgcgcgccgcctttaaggcaataaatgatagtaaacaggtg
gctgttctagtaccaaccacagttttagcggaacaacactataataactttatggagcgc
tttgtaaacttcggtgtaaacattgccgttttgagtcgtttccaaactaaggcgcaacaa
acagagattttggataagttaaagaaagggcgcgtggacttaatcattggtacccatcgt
cttttatctaaggatgtcgaatttcttgacttgggcttaatgattattgacgaggaacag
cgctttggtgtcaaacacaaggaacgcttgaaagagttaaaaacacaagttgatgttttg
acgcttacggcaacaccgataccaagaactttgcatatgtcgatgttaggtattcgtgat
ttatcagtcattgaaacgcctccaacaaaccgttaccctgtccaaacatatgtaatggaa
acgaattatggtgtggtgcgtgacgctgtacttcgagagatttcacgaggtggacaggtt
tactacattcacaatagagtagacagtattgagcaaaaagtttcacaactggaagagctg
atacctgaggcaagaattggttacattcatggacaaatgacagaaattcaattagaaaat
accctcatggattttatcaataatgaatatgatgtcttagtggcaacgacgattattgaa
acaggcgtcgatattccaaatgccaacacgctttttattgaaaatgccgatatgatggga
ttatcgcaactgtatcaattaagaggtcgagtaggacgaagtaatcgggtggcttatgct
tactttatgtataaaccagaaaaaatcttatctgaagtttcagaaaaacgtttggaagca
atcaagggatttacagaacttggctcaggctttaaaattgcaatgcgcgatctttcaatt
cggggtgcaggaaatttgctgggcgcagaacaatctggctttatagattcggtcggtttt
gagctttattcgcaactacttgaagaagcagtccataaacgcatgggcggtgataaggta
aaaaacaagaccaatgcggaaattattcttggtttagatgcctttatcccaagctactat
attggtgatgaaagacaaaaaattgaaatttataaacgtattcgtcaagtagatactcgg
aaaaactatgaggaattacaagatgagatgatggaccgttttggagaatatcctgatgag
gttgcttacctattagaaattggtttattgaaaacatttgcagataatgctctcgttgaa
aaaattgaaaaaaataaatttgatgtcttactgacaatggcaaaatcagccaataccatg
tatgatccacaagagtattttgaggctttgtctgaaacgaccttaaaagcaagtgttggt
gagaagctaggaaaaatgacatttcgctttaaaattgaaaatcgaaaagatgttgtcctc
ctccgtgaaatcatgaattttactgagaaactttcagaattacgagataatcacgaaaaa
gaataa
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