Lactococcus formosensis: LMK00_01110
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Entry
LMK00_01110 CDS
T08654
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lfo
Lactococcus formosensis
Pathway
lfo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lfo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LMK00_01110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lfo03019
]
LMK00_01110
03009 Ribosome biogenesis [BR:
lfo03009
]
LMK00_01110
Enzymes [BR:
lfo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LMK00_01110
Messenger RNA biogenesis [BR:
lfo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LMK00_01110
Ribosome biogenesis [BR:
lfo03009
]
Prokaryotic type
rRNA helicases
LMK00_01110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
GRP
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
USJ20621
UniProt:
A0A9Q9D751
LinkDB
All DBs
Position
219315..220925
Genome browser
AA seq
536 aa
AA seq
DB search
MKFNELGLSEGIVETLTAIGYEQPTPIQEQTIQLALSGRDVLGQAQTGTGKTAAFGLPTI
EKINPENKAIQALVIAPTRELAVQGQEELFRFGKSKGLKVRTVFGGSSIEKQIKALRSGA
HIVVGTPGRMVDLLKRKALDLSHLETLILDEADEMLNMGFLDDIEFIIGKTPAERQTLLF
SATMPNDIKKIGVKFMKDPEHIKVAAKEMTADRIDQYFIKTKEFEKFDVLTRLLDVERPE
LAIVFGRTKRRVDEITRGLKLRGYRAEGIHGDLDQNKRLRVLRDFKGGHLDILVATDVAA
RGLDISGVTHVYNYDITQDQESYVHRIGRTGRAGKSGRSVTFVSYNEMGYLRAIEKLTKK
EMKGMRPPTKEDAYQASLSVAMDEIKRDLQDGNLKGKLAKFDADAEQLMAEYDVKELVAM
LIQSRVKDPDTMPEVQITAERPLPFNGEGKGFKGKGKGGKGGGRYGRDRNNNRGGRGGDR
DGKGGYRGKGGDRDDKKRNWRDRDDKKRDYYKKDRKPKTQGSEKQAGFVMRNRGDK
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
ttgaaattcaacgaactcggcctttcagaaggcattgtcgagacgcttacagctatcggt
tatgagcaaccaactccaatccaagagcaaacgattcaactcgcgctctcaggacgcgac
gtccttggacaagctcaaacaggtactggtaaaacagccgcttttggccttccaacaatc
gaaaaaataaatccagaaaataaagcaattcaagctcttgtaattgctccaacccgtgaa
ctcgctgttcaaggtcaagaagaactcttccgctttggtaaatctaaaggacttaaagtt
cgcactgtttttggtggttcaagcatcgaaaaacaaatcaaagctttgcgttctggtgcc
catatcgttgttggcacaccaggacgtatggttgacttgcttaaacgtaaagcacttgac
ctttcacaccttgaaacattgattcttgatgaagccgatgaaatgcttaacatgggcttc
cttgatgatatcgaattcattattggtaaaacaccagcagaacgtcaaactttactcttc
tcagcaacaatgccaaatgacatcaaaaaaatcggtgtcaaattcatgaaagatcctgag
catatcaaagttgccgctaaagaaatgacagctgaccgtattgatcaatactttatcaaa
acaaaagaatttgaaaaattcgatgttttgacacgcttgcttgatgtggaacgcccagaa
cttgctatcgtctttgggcgtacaaaacgtcgtgttgacgaaatcacacgaggcttgaaa
ttacgtggttaccgtgccgaaggcattcacggcgacttggatcaaaacaaacgtttacgc
gttttacgcgattttaaaggcggtcacttggatatcttggttgctactgacgttgcagcc
cgtggacttgacatctcaggtgtaactcatgtttacaactatgacattacacaagaccaa
gaaagctacgttcaccgtatcggacgtacaggccgtgctggtaagtcaggtcgctctgta
accttcgtaagctacaatgaaatgggctatctccgtgccattgaaaaattgaccaagaaa
gaaatgaaaggtatgcgtccgccaacaaaagaagatgcttaccaagccagtctttctgtt
gctatggatgaaattaaacgtgatctccaagatggcaacctcaaaggtaaattagcaaaa
tttgatgcagatgcagagcaactcatggcagaatacgatgtcaaagaattagttgcaatg
cttattcaaagccgtgtgaaagatcctgacacaatgccagaagtacaaattacagctgaa
cgtccattaccgtttaatggtgagggcaaaggcttcaagggcaaaggtaaaggcggaaaa
ggtggcggccgttatggacgcgaccgtaacaacaatcgcggtggccgtggcggcgatcgt
gatggtaagggcggttaccgtggtaaaggcggcgatcgcgatgacaagaagcgcaattgg
cgtgaccgtgacgataaaaaacgtgattactacaaaaaagaccgtaaaccaaaaacacaa
ggcagcgaaaaacaagctggctttgtaatgcgtaaccgcggcgataaataa
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