Lactococcus formosensis: LMK00_01420
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Entry
LMK00_01420 CDS
T08654
Name
(GenBank) DEAD/DEAH box helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
lfo
Lactococcus formosensis
Brite
KEGG Orthology (KO) [BR:
lfo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lfo03019
]
LMK00_01420
03009 Ribosome biogenesis [BR:
lfo03009
]
LMK00_01420
Enzymes [BR:
lfo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LMK00_01420
Messenger RNA biogenesis [BR:
lfo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LMK00_01420
Ribosome biogenesis [BR:
lfo03009
]
Prokaryotic type
rRNA helicases
LMK00_01420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DUF533
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
USJ20679
UniProt:
A0A9Q9D748
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All DBs
Position
284382..285722
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AA seq
446 aa
AA seq
DB search
MKFTEFNFKDYINETLEAIKFVSPTPVQEKLIPVVMSGRDLVGESKTGSGKTHTFLLPIF
QQLNTDLDEVQAVITAPSRELATQIYHAAQEFVKFNDAIRVVNYVGGTDKARQIKKLESS
QPHIVIGTPGRIQDLLKSGALIIHTASIFVVDEADMTLDMGFLTDVDKIAASFGKKVQML
VFSATIPQKLQPFLKKYLNNPVMEKIANKTVISDTIENWLISTKGASHNQILLQLSKATN
PYMAMIFANTKGRVDDIHHFLVNNGVKAAKIHGDIPPRERKRIMASIKNLDYQFVVATDI
AARGIDIEGVSHVINDELPRDLSFFVHRVGRSGRNGLSGTAITLYSPSDDSAIREIEKMG
VTFQPKAVKNGEIVDSYDRDRREKRTAKTGELSNKMRGQLAKSKKKVKPGYKRALKWAIE
EENTKKRRAEHNKNARKQREARKQKF
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttacagaatttaactttaaagattatatcaatgaaacgcttgaggcaattaag
tttgtttcgccgactcctgtacaggaaaaacttatccctgtggtaatgtcaggccgtgat
ttggtaggggaatcaaaaacaggttcaggaaagacacatactttcttgctccctattttc
caacaattaaacacggatcttgatgaagtccaagctgttattaccgcaccatcacgtgag
cttgccacacagatttatcatgctgctcaggaatttgtcaaatttaacgatgcgattcgc
gtggttaactatgttggtgggacagataaggcgcgtcaaatcaagaaacttgaatcttct
caaccgcatatcgttattggtacgccaggtcgtattcaagatttgcttaaatctggggct
ttgattattcatacggcgtctatttttgttgtagatgaagcggacatgactttggatatg
ggcttcttgacagatgtggataaaattgcagccagcttcggtaaaaaagtacagatgctg
gtcttctctgcaactattccacaaaaattacagccatttctaaaaaaatatttgaataat
cctgtgatggaaaaaattgcgaataaaactgtaatttcagacacgattgaaaactggttg
atttcgactaaaggcgcatcacataaccaaattttattgcagctttcgaaggcgacaaat
ccttatatggcaatgatttttgccaatacaaagggacgtgttgatgatatccatcacttc
ttggtcaataatggcgtcaaagcagcgaaaattcatggtgatattccaccacgtgaacgt
aaacgtatcatggcaagcataaaaaacttagattatcagtttgttgtagcgacagatatt
gcagcacgggggattgatatcgaaggtgtaagtcacgtcattaatgatgaactgccacgt
gatctttctttctttgttcaccgtgtaggacgttcaggtcgtaatggtttatctggaacg
gcaatcacactttatagcccttcagatgattcagccattcgtgaaattgaaaaaatgggc
gtaacattccaacctaaagctgtgaaaaatggtgagattgttgattcttatgatcgtgat
cgtcgtgaaaaacgtacagccaagactggagagttgtctaacaaaatgcgtggtcagttg
gctaagagtaagaaaaaagtcaaaccaggctataaacgtgccttgaaatgggcgattgaa
gaagaaaatacgaaaaaacgtcgtgcagagcacaataaaaatgcacgtaagcaacgtgaa
gcccgcaaacaaaaattctaa
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