Lactococcus formosensis: LMK00_01580
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Entry
LMK00_01580 CDS
T08654
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
lfo
Lactococcus formosensis
Pathway
lfo03030
DNA replication
lfo03430
Mismatch repair
lfo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lfo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LMK00_01580
03430 Mismatch repair
LMK00_01580
03440 Homologous recombination
LMK00_01580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lfo03032
]
LMK00_01580
03400 DNA repair and recombination proteins [BR:
lfo03400
]
LMK00_01580
Enzymes [BR:
lfo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LMK00_01580
DNA replication proteins [BR:
lfo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LMK00_01580
DNA repair and recombination proteins [BR:
lfo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LMK00_01580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
tRNA_anti-codon
HHH_6
DUF1847
Motif
Other DBs
NCBI-ProteinID:
USJ20709
UniProt:
A0A9Q9D759
LinkDB
All DBs
Position
318702..321818
Genome browser
AA seq
1038 aa
AA seq
DB search
MFAQLNTKTEYSFLDSVVRVDDYLNMAEKMGYKQLGICDVGNLHGAYSFAIKAQKKNIQP
IIGIELVFELETLPVSFSFIAKNTEGYKNLLKISSSYNYGRHRFSDIESFLNDVALVVPE
SYANLSALSQIQAEVYVGVLPTSTEQISLQFPPLPFNPVRYLSQADNESLEVLHAIRDLI
PYNQELTLSNAQLLQRPEVYEKLYAKNYPQALDNLENLVENISYDFSEKLGLPQFDKQRD
AAELLRERAEAHLPVGEVYRTRLEHELSVIHQMGFDDYFLIVADLLRYASENAIYCGMGR
GSAAGSLVAYTLGITHVDPVANNLFFERFLNPERVAMPDIDIDMPDTKRSELLAYMKRRY
GSDHVAQIVTFSTLGKRQALRDVGKAFGMNEAELSSLTRMLGQRFGSLRDEYEENPRLKA
EVLRDSRLQKVYEIATRIEGLPRQTSTHASGVVLSQESLVNYVPLKPSDDLALTQYEALD
VEAIGLLKIDFLGLRNLTIIERLCELVQQRKNVRIDPLHIDLEDEKTLALFRAGNTLGIF
QFENPQMRRFLRNLAPTKFEDIVDATSIFRPGPSQFIPQFVARRHGQEKVEVVDETLTEI
LAPTYGIMIYQEQIMQVAQRFAGFSLGKADLLRRAISKKKGKEFEELQAEFLAGSLKLGH
TEAQAMEIYRLIERFANYGFNRSHAYAYAALAFQIAYFKANYPDEFYEVQLRDRKRESMI
QDALDNDFQMEQPFINRMPYHDRVENGKIALGLANVRTIPRDMAFWIVEHRPFNDLANLV
KSLPQNFQKEDYLLPLVQIGAFDEQDRNRGKLAQNLPTLIDYNQNIQLDLFRDSALKFSF
QDAEDYLQSEKYEFEKQFLGVGITPHPLQSLALKLKTNFTALTELQKNKRATVLVELLAV
RTHRTKTGETMAFLSTTDSKENFDITLFPENYRRFMANLEKGKFYLVSGKVSERNDALQM
LADRVIEVEDTQRKLWLNLEDASHNSRVSQILREFPGGIQVILHFADTKKTTQTQVYVEE
NDLLLNKLKTYVLNAVYK
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
atgtttgcacaactcaacaccaaaacagagtacagttttttagacagtgttgtccgagtg
gatgattatctgaatatggcagaaaaaatgggctataaacaactcggcatttgcgatgtt
ggaaatctacatggtgcttatagctttgctattaaagcgcaaaagaaaaacatacagccc
attattggaatagagcttgtttttgagctagaaaccttacctgtttcctttagtttcatt
gcaaaaaatactgagggttataaaaaccttttaaaaatatcctccagctataattacgga
cgccaccgcttttctgatattgagagctttttaaatgatgtggctttggtggtccccgag
tcttatgcaaatctatctgccctttcacagatccaggcagaagtatatgtaggagtcttg
cctactagcaccgagcaaatatcacttcagtttcccccccttccattcaaccctgtacgc
tacttgtcacaagccgataatgaaagccttgaagttctgcatgcgatacgtgacttaata
ccttacaatcaagagttgacgttatcaaatgctcaacttttacagagaccagaagtctat
gaaaaattatatgctaagaattatcctcaagctttagataatcttgaaaatttagtggaa
aatatttcatatgactttagtgaaaagttaggattacctcagtttgataaacaaagagat
gctgcggaactcttacgcgaaagagcagaagcccatctgcctgtaggagaagtttaccgc
acacgtcttgaacatgaactttcggtcattcatcagatgggttttgatgattatttcctt
atcgttgcggacttattacgctatgcaagtgaaaatgctatctactgtgggatggggcgc
ggctctgctgctggttcattagtagcttacacattggggattactcatgttgatcctgtg
gcaaataatctcttctttgagcgtttcctaaatccagaacgtgtcgcgatgcccgatatc
gatattgacatgcccgataccaaacgttccgagttacttgcttatatgaagcgacgatat
ggaagtgaccacgtggcacagattgtaactttctcgaccttgggtaaacgtcaagcttta
cgtgatgtaggaaaagcttttggaatgaatgaggctgagctctcttctcttacacggatg
cttggacaacgttttggttcccttcgtgatgaatacgaggaaaaccctaggcttaaggct
gaagttttgcgcgatagccgtttgcaaaaagtatatgagattgctactcggattgaggga
ttaccccgtcaaacctcaacacatgcttcaggcgtagtgttaagccaagaatctttggtc
aattacgtccctctaaaaccatccgatgatttggcactcacacagtatgaggcactggat
gtcgaagcaatcgggcttttaaaaatcgactttttgggtttacgtaatttaacgataatt
gagcgtttgtgcgaattagtacaacaacgtaaaaacgtgcgtattgatcccttgcacatt
gatttagaagatgaaaaaacattagcactttttcgcgctggaaatactctaggtattttt
caatttgaaaatccacagatgagacgtttcttgcgtaatctagccccaacaaagtttgag
gatattgttgatgcgacatctatttttcgtccaggcccttcacagtttattccacaattt
gttgctcgacgtcacggacaggaaaaagtagaagtcgttgacgagactctgacagaaata
ttagccccgacttatggcattatgatttatcaggaacaaatcatgcaagttgcacaacgc
tttgctggcttctctttgggtaaggctgacttgctccgccgtgcaatctcaaagaagaaa
ggaaaagaatttgaagagctccaagctgaatttttagcaggtagtctgaagcttgggcat
actgaagcacaagctatggagatataccgtctgattgaacgttttgctaactatggtttt
aaccgttcccatgcctatgcttatgctgctttagcttttcaaattgcctacttcaaggcg
aattatcccgatgaattttatgaggtccaactgcgagatcgcaaaagagagagtatgatt
caagacgctttggataatgatttccaaatggagcaacctttcattaatcggatgccctat
catgacagagtagaaaatggaaaaattgccttaggcttagcaaatgtacggaccattcca
cgagatatggcattctggattgttgaacatagaccctttaatgatttagccaatcttgta
aaaagtttaccgcaaaatttccagaaagaagattatttacttcctcttgtgcaaattgga
gcctttgatgagcaagataggaacagagggaagcttgcccagaacttaccgactttgatt
gattataaccaaaatatccaactggatctttttcgagattctgccttaaaattctctttt
caagatgcagaggattatctacaatcagagaaatatgagtttgaaaagcaatttttaggc
gttgggattacgcctcatcctttgcaatctttagcgcttaaactgaaaacaaattttaca
gcactgaccgagttgcaaaaaaataagcgagcgactgtactagtcgaactgcttgccgtg
cgtacccaccgtacaaagactggggagacaatggctttcctatcgacaactgacagtaag
gaaaattttgatattactctttttccagaaaattatcggcggtttatggcaaatcttgaa
aaaggaaaattttatttagtctctgggaaagtttctgaaagaaatgatgctttgcaaatg
cttgctgatcgtgttattgaagtagaagacacacagcgtaaactgtggctaaatcttgaa
gatgcaagtcataattcacgcgtttctcaaattttacgtgaatttcctggggggatacaa
gttattctgcattttgctgatacaaaaaaaaccacacagactcaggtctatgtggaagaa
aatgatttacttttgaataagttgaaaacctatgtcttaaacgctgtttataaatag
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