Lactococcus formosensis: LMK00_01970
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Entry
LMK00_01970 CDS
T08654
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
lfo
Lactococcus formosensis
Pathway
lfo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lfo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LMK00_01970 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lfo03021
]
LMK00_01970 (rpoB)
03400 DNA repair and recombination proteins [BR:
lfo03400
]
LMK00_01970 (rpoB)
Enzymes [BR:
lfo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LMK00_01970 (rpoB)
Transcription machinery [BR:
lfo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LMK00_01970 (rpoB)
DNA repair and recombination proteins [BR:
lfo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LMK00_01970 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
DOCK-C2
Motif
Other DBs
NCBI-ProteinID:
USJ20784
UniProt:
A0A9Q9D785
LinkDB
All DBs
Position
402423..406013
Genome browser
AA seq
1196 aa
AA seq
DB search
MAGHDVKYGKHRTRRSFSRIKEVIGLPNLIEVQTASYQNFLDEGLANVFKEMFPIDNFAG
TMELEFVGYEMKAPKYTVDEARAHDANYSAPIHVTFRLVNKETGELKTQEVFFGDFPLMT
EMGTFINNGSERLIVSQLVRSPGSYFHLKTDKNGLESYGHTTIPNRGAWFELDTDAKGVG
YVRIDRTRKLTFTTMLRALGFGSDDEILELMGPSELLNTTLGKDVHKNPSDTRVEEALKD
IYDRLRPGEPKTADSSRGLLIARFFDPRRYDFAPVGRYKFNKKLALKNRILGLTLAEPIV
DPETGEILVESDTLVTRDVLDSIENLLDNGLNTTVYQPSDDAVIPEPIELQTLKVYSPKD
PERVVTLISNGQIPAENRVLMPADVIANINYWLGLSEGIGKVDDIDHLGNRRIRSVGELL
QNQVRIGLSRMERVIRERMSSSENENMTPQGLINIRPVTAAIKEFFGSSQLSQFMDQHNP
LSELSHKRRFSALGPGGISRDRASYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYAK
INEYGFIMSPYRRIDRATGTVTDEVEYLTADEEDNYTVAQANSPLTDDNKFVNETVMARH
VGNNIEVDASTADYMDVSPKQVIAVAAACIPFLENDDSNRALMGANMQRQAVPLIDPHAP
WIGTGMEHQTARDSGAAVIAKHDGTVEYVDADEIRVRRTSGELDIYNIMKYRRSNSGTSY
NQRPLAELGDKVEAGDIIGDGPSMENGEMALGQNPLVAYMTWEGYNFEDAIIMSERLIKD
DVYTSIAIEEYESETRDTKLGPEEITREIPNIGDEALKNLDEDGIIRIGAEVEDGDLLVG
KVTPKGETDPTPEERLLRAIFGEKAREVRDTSLRVPHGGGGIVHDVRVFTRENGDELPSG
VNKLVRVFISQKRKIHVGDKMAGRHGNKGVVSNIVPMEDMPYLPDGTPIDIMLNPLGVPS
RMNIGQVMELHLGMAARTLGIHIASPVFDGASDEDIWDTVKEAGMADDAKTVLYDGRTGE
AFDNRISVGVMYMIKLHHMVDDKLHARSVGPYSLVTQQPLGGKAQFGGQRFGEMEVWALE
AYGAANVLQEILTYKSDDVIGRTRAYEAIVKGERIPKPGLPESFRVLVKELQALGMDLKV
LDGEKNVLDLRELDDEIEVRQENIDITPEMLEAQEQIVTEAVETEQALISEAKEEK
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
ttggcaggacatgacgtaaaatacggtaaacaccgtacaagacgcagtttttcacgaatc
aaagaagtaattggtttgccgaacttgatcgaagttcaaacagcaagttatcaaaacttc
cttgacgaaggtttggctaacgtcttcaaagaaatgtttccaattgacaactttgcgggc
acaatggagcttgaatttgttggatatgaaatgaaagcccctaaatacactgtggatgaa
gcccgtgctcacgatgcaaactattctgcaccaatccatgtgactttccgccttgtaaat
aaagaaacaggcgaattgaaaacacaagaagttttcttcggtgatttcccacttatgact
gaaatgggtacattcatcaacaacggttctgaacgtttgatcgtcagccagttggtacgt
agcccaggttcatacttccaccttaaaacagataaaaatggtttggaatcttatggtcat
acaactattcctaaccgtggtgcgtggtttgaattagatacagacgctaaaggtgttggt
tatgtacgtattgaccgtacacgtaagttgacatttacaacaatgttgcgtgcacttggt
tttggtagtgacgatgaaatccttgaacttatgggaccaagtgaactcctcaatacaaca
ttgggtaaagatgttcacaaaaacccatcagacactcgtgttgaagaagcgcttaaagac
atctatgatcgcctccgtcctggtgaacctaaaacagcggacagctctcgtggactttta
attgcacgtttcttcgatccacgtcgttacgactttgcacctgtaggtcgttataaattt
aataaaaaacttgcccttaaaaaccgtatccttggtttgacattggcagaaccaatcgtt
gatcctgaaacaggcgaaattcttgttgaatctgatactctcgtaacacgtgatgttttg
gattctatcgaaaatcttttggataatggtctcaatacaacagtttatcaaccatctgac
gatgctgttatccctgaaccaattgaacttcaaacattgaaagtttactctccaaaagat
ccagaacgtgtcgtgacattgatttctaacggtcaaattcctgctgaaaaccgtgtgttg
atgccagcagatgtgattgctaatatcaactactggttaggtctttctgaaggtattggt
aaggttgacgatatcgaccacttaggaaaccgtcgtatccgttcagttggtgaattgctt
caaaaccaagtacgtatcggtctttcacgtatggaacgtgttatccgtgaacgtatgtca
tcttctgaaaatgaaaatatgacacctcaaggattgattaacattcgtcctgtaacagct
gcaattaaagaattctttggttcttcacagttgtcacaatttatggaccaacacaatcct
ttgtcagagctttcacacaaacgtcgtttctctgccttaggtcctggtggtatctcacgt
gaccgtgcttcatatgaagtacgtgacgttcactacactcactatggccgtatgtgtccg
attgaaacacctgagggaccaaatatcgggttgatcaataacttgtcttcttatgccaaa
atcaatgaatatggtttcatcatgtcaccataccgtcgtattgatcgcgcaacagggact
gttacagatgaagttgaatacttaacagctgacgaagaagacaactatacagttgcccaa
gctaactcaccattgactgatgacaataaatttgtcaatgaaacagtaatggcccgtcac
gttggtaacaatatcgaagttgatgcttcaactgcagattacatggacgtttcacctaag
caggttattgccgtagctgcagcttgtattcctttcttggaaaacgatgactccaaccgt
gccctcatgggtgccaacatgcaacgtcaagccgttccattgattgatccgcatgcacct
tggattggtacaggtatggaacatcaaacagcccgtgactctggtgctgctgtgattgct
aaacatgatggtactgttgaatatgtagatgctgacgagatccgtgtacgtcgtacatca
ggtgagcttgatatctataacatcatgaaataccgtcgttcaaactcagggacttcatat
aaccaacgtccacttgctgaacttggggataaggttgaagctggcgatatcatcggtgat
ggcccatcaatggaaaatggagaaatggcgctcggtcaaaacccacttgtggcgtatatg
acttgggaaggttataacttcgaggatgccatcatcatgtctgaacgtttgatcaaagat
gacgtttatacatctattgcgattgaagagtacgagtcagaaacacgcgatacaaagctt
ggccctgaagaaatcacacgcgaaattccaaatattggtgatgaagcccttaaaaacttg
gacgaagacggtattatccgcatcggtgctgaggttgaagatggggacttgctcgtcggt
aaagtaacaccaaaaggtgaaactgatccaactcctgaagaacgccttcttcgtgctatc
tttggtgaaaaagcacgtgaagttcgtgatacatcactccgtgtgcctcacggtggtggc
ggtatcgttcacgatgtacgtgtattcacacgtgaaaatggtgatgaattgccatcaggt
gtgaacaagttggttcgtgtcttcatctcacaaaaacgtaaaatccacgttggggataag
atggccggtcgtcacggaaacaaaggtgtcgtttcaaatatcgttcctatggaagatatg
ccttacttaccagatggtacaccaatcgacatcatgttgaatccacttggtgtcccttct
cgtatgaatatcggacaagttatggagctccacttgggtatggctgcccgtacattaggt
atacacattgcatcaccagtcttcgacggtgcgagtgatgaagatatctgggatacagtt
aaagaagctggaatggctgatgatgccaaaacagtcctttacgatggccgtacgggtgaa
gcctttgataaccgtatttctgtcggtgtcatgtacatgatcaaacttcaccacatggtt
gatgataaacttcacgcacgtagcgttggtccttactcacttgttacacaacaaccgctc
ggtggtaaagcacagttcggtggacaacgtttcggggaaatggaagtttgggcccttgaa
gcttatggtgcggcaaatgtcctccaagaaatcttgacatacaagtcagatgatgttatt
ggacgtacacgtgcttatgaagctattgttaagggtgaacgtattcctaaaccaggtctt
cctgaatcattccgtgtccttgtaaaagaattacaagcgcttggtatggatcttaaagtc
cttgatggtgagaaaaatgtccttgatcttcgtgaacttgatgatgaaattgaagttcgt
caagaaaatattgacattacgccagaaatgcttgaagctcaggagcaaattgttactgaa
gcagtggaaactgaacaagcattgattagcgaagcaaaagaagaaaaataa
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