Lactococcus formosensis: LMK00_08515
Help
Entry
LMK00_08515 CDS
T08654
Symbol
uvrA
Name
(GenBank) excinuclease ABC subunit UvrA
KO
K03701
excinuclease ABC subunit A
Organism
lfo
Lactococcus formosensis
Pathway
lfo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lfo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LMK00_08515 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lfo03400
]
LMK00_08515 (uvrA)
DNA repair and recombination proteins [BR:
lfo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LMK00_08515 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LMK00_08515 (uvrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
RsgA_GTPase
AAA_29
AAA_16
nSTAND1
AAA_33
AAA_21
Viral_helicase1
AAA_22
AAA_23
nSTAND3
DnaJ_CXXCXGXG
NACHT
AAA_14
SLFN-g3_helicase
ATPase
AAA_24
Septin
cobW
MMR_HSR1
RNA_helicase
IIGP
T2SSE
NB-ARC
Frankia_peptide
NTPase_1
Dynamin_N
DUF463
DUF87
Motif
Other DBs
NCBI-ProteinID:
USJ19867
UniProt:
A0A9Q9D6D6
LinkDB
All DBs
Position
complement(1728861..1731680)
Genome browser
AA seq
939 aa
AA seq
DB search
MPQDKIVIHGAREHNLKNIDVTIPRDKLVVVTGVSGSGKSSLAFETLYAEGQRRYVESLS
AYARQFLGNMDKPDVDSIDGLSPAISIDQKTTSKNPRSTVGTVTEINDYLRLLFARVGKP
FCINGHGEISAQSVEEIVDQILELPEKTRLQILAPIVRGKKGQHVKVFERVQKEGYVRVR
ADGEVYDVTEAPELDKNKKHNIEVVIDRIVVKEGIRSRLFDSVEAALRIAEGYVIVDKMD
GEELLFSEFYACPVCGFTVPELEPRLFSFNAPFGSCPDCDGLGMKNEVDPDLVIPDDSKT
LREGAIVAWNPISSNYYPTMLECACRDFGIDMDTPWADLPEEHKDLILNGSGKREFHFHY
VGDFGNVSDKDMVFPGIINNINRRFRETSSDYTREYLRGYMTELTCTTCHGYRLNDQALS
VKVDGKHIGELSNLAIGDELEFLAALTLSANDEMIAQPIVKEIKDRLSFLKNVGLDYLTL
SRASGTLSGGESQRIRLATQIGSNLSGVLYILDEPSIGLHQRDNDRLIESLQKMRDLGNT
LIVVEHDEDTMKAADWLIDVGPGAGDLGGEIIAAGTPKQVAKNKKSLTGQYLSGKRSIPV
PEKRRKIDKKRMVKVTGASENNLQNIDAQFPLGIMTAVTGVSGSGKSTLVNSILKKTLAQ
KLNHNSEKPGKHKKVTGYEEIERLIDIDQSPIGRTPRSNPATYTSVFDDIRGLFAETNEA
KIRGYKKGRFSFNVKGGRCEACSGDGIIKIEMHFLPDVYVPCEICHGKRYNSETLEVHYK
GKNISEILDMRVSDALEFFRHIPKIERKLQTIVDVGLGYVTLGQPATTLSGGEAQRMKLA
SELQKRSTGKSFYILDEPTTGLHSEDIATLIKVLDRLVDQGNTIVVIEHNLDVIKTADYI
IDLGPEGGAGGGTILATGTPEEVAEVEQSYTGQYLKQKL
NT seq
2820 nt
NT seq
+upstream
nt +downstream
nt
atgccccaagataaaattgtgatacatggtgcgcgtgagcacaacttaaaaaatatagat
gttactattccacgtgataagttggttgttgttacaggtgtttcaggttcagggaaatct
tctctggcttttgagactttatatgctgaaggacaacgtcgttatgtcgaatcattatct
gcttatgctcgtcagtttttaggtaatatggataaaccagatgtggacagtattgacgga
ttgtcgccagccatctctatcgaccagaaaacaaccagtaaaaatccacgctctactgtc
ggaacagtaacggagattaacgattacctccgtctactttttgcgcgtgtcggaaaacct
ttctgtatcaatggacacggagaaatttcagcacaatcggttgaagaaattgtggatcaa
atccttgaattgccagaaaaaacacgcctacagattttagcaccaattgtgcgtggtaaa
aaaggacaacacgttaaagtttttgagagggtgcaaaaagaaggctatgtccgtgtccgc
gcagatggtgaagtttacgatgtgacagaagcaccagagcttgataaaaataaaaagcac
aatatcgaagtcgttattgaccgtatcgtcgtaaaagaaggcattcgttcacgtttgttt
gactctgtcgaagcagcacttcgtattgctgaaggctatgttattgtggataagatggat
ggggaggaactccttttcagcgagttctatgcctgtcctgtttgtggctttacagttcct
gagttagaaccacgtcttttttcatttaatgcaccttttggttcttgtccggactgtgat
ggtctcggaatgaaaaacgaagtcgatcctgacttggttattcctgacgacagcaagacc
ttacgtgaaggcgctatagttgcatggaatcccatatcctcaaattactacccaactatg
ctagagtgtgcttgccgagattttggcattgacatggatacgccatgggcagacttacct
gaggaacacaaagaccttatccttaacggttcaggtaaacgagagtttcattttcattat
gtcggtgattttggtaatgtgtctgataaagacatggttttccctggtattattaataat
atcaaccgtcgtttccgcgaaacttcaagtgactatacacgtgagtacttgcgcggctac
atgactgagctgacttgtacgacttgtcatggctatcgtttgaacgatcaagccctttcc
gttaaggttgatggaaaacatattggcgaactttctaatttagctatcggtgacgagtta
gagttcttagctgcgcttactttatctgcaaacgacgaaatgattgcccaacccattgtg
aaagaaatcaaggatcgcttatctttcttaaaaaatgtagggctagactatctgacgctt
tcacgggcttcagggaccctatcgggtggagaatcgcaacgtatccgtttagcgacacag
attggttctaacctttcaggtgtcctttatatccttgatgagccatcaattggtctacat
caaagagacaatgaccgcttgattgaatccctccaaaaaatgcgtgatttaggcaataca
cttatcgtggttgagcatgatgaagatacgatgaaagcagcagattggctgattgatgtc
ggaccaggcgctggagatttaggtggtgaaatcatcgctgctggaacgccaaaacaagta
gcgaaaaataaaaaatctttgacaggacaatatctatctgggaaacgctccatccctgta
ccggaaaagcgccgtaaaatcgataaaaaacgtatggtgaaggttactggggcttcagaa
aacaatttacaaaatatcgatgcccaatttcctttagggattatgacagctgtaaccggt
gtttcagggtcgggtaaatctaccttggttaattcgattttgaagaaaaccttggcgcaa
aaactcaatcataattcagaaaaaccgggcaaacataaaaaagttactggttatgaagag
attgaacgtttgattgatattgaccaatcgccgatcggacgtactccccgttcaaatcca
gctacttacacctctgtttttgatgacatccgtggactttttgcggaaacaaacgaagcc
aaaattcgaggctacaaaaaaggacgcttttcatttaacgtcaaaggtggacgttgtgaa
gcttgttctggagatgggattatcaagattgaaatgcactttcttccagatgtgtatgtc
ccatgtgaaatctgtcatggcaaacgctataactcagagaccttggaagtacattataaa
gggaaaaatatttcagaaattcttgatatgcgcgtgtcggatgctttggaattcttccgt
catattcccaaaattgagagaaaattgcaaaccatcgttgatgtcggcttaggctatgtc
actttgggtcaaccagccacaaccttatctggtggtgaagcgcaacggatgaaactggct
tctgagctacaaaaacgcagtacaggcaagagcttttatatcctggatgagcctacaaca
ggcttacacagcgaagatatcgccacattgattaaagttttagatcgtcttgtggatcag
ggaaataccattgttgttattgaacataatcttgacgtgattaagacggctgactacatt
attgacctaggaccagaaggtggtgctggcggtggaactatcttagctactggtacacca
gaagaagttgctgaggttgaacaatcttatactggacaatatttaaaacaaaaattataa
DBGET
integrated database retrieval system
