Lactococcus formosensis: LMK00_09275
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Entry
LMK00_09275 CDS
T08654
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
lfo
Lactococcus formosensis
Pathway
lfo02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
lfo00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LMK00_09275 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lfo03021
]
LMK00_09275 (rpoD)
Transcription machinery [BR:
lfo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LMK00_09275 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
IF2_N
Sigma70_r1_1
DBD_HTH
Motif
Other DBs
NCBI-ProteinID:
USJ20011
UniProt:
A0A9Q8Y159
LinkDB
All DBs
Position
complement(1880175..1881557)
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AA seq
460 aa
AA seq
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MASNNKKRISQIAKETGITNKALIAKAQELGMAVKSHSSSIFEAEEAKLLAAMDFKPIIV
EKVDVEELKEKGSKHVTSVKEKAAKKIDIKDSDTFDNKAFDKAVAAYITKRKPLEEALDD
EITDELVVKFGLEAEAIEDLLQQIQDAGISIVDKEGNPSPLALQAEEEEKLDDNAMDEIV
TNVRIDDPVRMYLKEIGRYPLISLEEETKLAEAIVAGGDEAEFAKQMLAEANLRLVVSIA
KRYSGRGMQFLDLIQEGNMGLMKAVDKFDHTKGFKFSTYATWWIRQAITRAIADQARTIR
IPVHMVETINKLIRVQRNLLQELGRDPLPEEIGKELHMTPDKVREVLKIAQEPVSLETPI
GEEDDSHLGDFIEDDVIESPVDYTNRILLREQLDEVMDTLTDREENVLRMRFGLDDGRMH
TLEDVGKQFKVTRERIRQIEAKAIKKLRHPRRSKPLRDFM
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
ttggcaagtaataataaaaaaagaatcagtcagattgcaaaagaaactggaattactaac
aaagctttaatcgcaaaagcacaagaacttggcatggcggttaaatcacactcaagttct
atttttgaagctgaagaagcaaaactccttgcagcaatggattttaaaccaattattgtt
gaaaaggttgatgtagaagagctgaaagagaagggttctaagcatgtaacctctgttaaa
gaaaaagcagctaagaaaattgatattaaagattcagatacctttgacaacaaagctttt
gataaagcagtagcagcatatatcacaaaacgtaaacctctcgaagaagctttagatgat
gaaattacagatgagcttgtagtgaaatttggtttggaagccgaagctatcgaagattta
cttcaacaaatccaagatgcaggcatttctatcgtcgataaagaaggaaatcctagtcca
ttagctttgcaagctgaagaagaagaaaagcttgatgataatgcaatggatgaaatcgtg
acaaatgtccgcattgatgatcctgtccgcatgtatcttaaggaaatcggacgttatcca
ttgatttcgctcgaagaagaaacaaaacttgcggaagctattgttgcaggtggtgatgaa
gcagaatttgccaagcaaatgcttgcggaagccaacttacgtttggttgtttccattgca
aaacgttattctggacgcgggatgcaatttctggatttgattcaagaaggaaatatggga
cttatgaaagctgtggacaaatttgaccacactaaaggtttcaaattctcaacttatgcg
acatggtggattcgtcaagccatcacacgtgcgattgctgaccaagcacgtacaattcgt
attcctgtccacatggttgaaacaatcaacaagttgatccgtgtgcaacgtaatctttta
caagaattgggtcgtgatcctttaccagaagaaatcggtaaagaattacacatgacgcct
gataaagttcgtgaagtcttgaaaattgcgcaagaacctgtatcattggaaacacctatt
ggtgaggaagacgattcacatcttggtgatttcattgaagatgatgtaattgaaagccct
gtagactacacaaatcgtatcttgcttcgtgaacagcttgatgaagttatggataccttg
acagaccgtgaagaaaacgtattgcgtatgcgttttggacttgatgatggacgtatgcac
acacttgaagatgttggtaaacaatttaaagtgacacgtgaacgtattcgtcaaattgaa
gctaaagcgattaaaaaattacgtcatcctcgtcgcagcaaaccattgcgtgactttatg
taa
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