Leptospirillum ferriphilum YSK: Y981_11615
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Entry
Y981_11615 CDS
T03197
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
lfp
Leptospirillum ferriphilum YSK
Pathway
lfp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lfp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Y981_11615 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lfp03021
]
Y981_11615 (rho)
03019 Messenger RNA biogenesis [BR:
lfp03019
]
Y981_11615 (rho)
Transcription machinery [BR:
lfp03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Y981_11615 (rho)
Messenger RNA biogenesis [BR:
lfp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Y981_11615 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_22
Spore_III_AA
AAA
AAA_25
OB_RNB
S1CSD-TOTE-2
NACHT
AAA_28
Motif
Other DBs
NCBI-ProteinID:
AIA31149
UniProt:
A0A059XRD9
LinkDB
All DBs
Position
complement(2064806..2066056)
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AA seq
416 aa
AA seq
DB search
MNLAELKEKSIAELTEVAKELHIEGAVNLRKQDLIFALLQAQSDKNGPITGEGVLEILQD
GFGFLRSPLYNYLPGPDDIYVSPSQIRRFNLRTGDTVWGQIRPPKEGERYFAMLKVEKVN
FEDSDSGREKILFDNLTPLYPMERIRLEHSPDDLSMRVMDLVTPIGKGQRGLIVAPPRTG
KTMLLQGLAKAISKNYPDIVLIVLLIDERPEEVTDMVRQVKGEVVSSTFDEPPQRHIQVA
EMVLEKAKRLAESQKDVVILLDSITRLARAFNTVAPPSGKVLSGGLDSNALQRPKRFFGS
ARNIEEGGSLTIIATALIDTGSRMDDVIFEEFKGTGNMELHLDRHLSDRRIFPAINVTLS
GTRKEELLLDKDDLNKIWILRKALNSNNPQDDMEYLLSNMKGTKGNKEFLERMMKG
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgcggaattgaaagagaaaagtattgcggaactgaccgaggtggccaaggag
ctccatatagaaggggcagtcaaccttcggaaacaggatctgatctttgcccttctgcag
gcgcaatcggataaaaacgggcctatcacgggagagggtgttcttgaaattctccaggac
gggtttggttttctccggtctcccctgtacaactaccttcccgggccggacgatatctac
gtttctccttcccaaatccggaggttcaacctgagaacgggagacaccgtttgggggcaa
atacgtcctcccaaggagggagagcgctattttgcgatgctgaaagtggagaaggtcaac
tttgaagattctgactccggccgcgaaaagattctcttcgataatttgacgcctctctat
ccgatggaaaggatccggctggaacattccccggatgatctttccatgcgtgtcatggat
ttggtgacgcctatcggaaaaggtcagaggggtttgattgttgctcccccccgaaccgga
aagacgatgcttcttcagggccttgccaaggccatctccaaaaattatccggatatcgtt
ctgattgttttgctgatcgatgaaagaccggaagaagtgacggatatggttcggcaagtc
aagggtgaagtcgtcagttcgacttttgatgagccgccgcaaaggcacattcaggtggcc
gaaatggttctggagaaagccaagagattggcagagtcccaaaaagatgtcgtcatcctc
ctggacagcattacccgtttggcccgggcctttaatacggtggcccctccctccggaaag
gttctttcaggaggtctggactcgaacgcgttgcaaaggccgaaacgttttttcggctct
gctcgcaatatcgaggaaggaggaagcctgacgatcattgccaccgcccttattgatacg
gggagccggatggacgatgtgatctttgaggagttcaagggaacggggaatatggaactt
catctggacagacatttatccgatcgaagaatcttcccggccatcaatgtcacgctttcc
ggaacacggaaggaagaactcctgctcgacaaggatgacctgaacaagatctggatcctc
cgcaaggcgctcaattcaaacaacccccaggatgatatggagtatttgctcagcaacatg
aaggggacaaaaggaaacaaggagtttttggaaagaatgatgaaaggctag
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