Limosilactobacillus fermentum CECT 5716: LC40_0114
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Entry
LC40_0114 CDS
T01958
Name
(GenBank) Exodeoxyribonuclease
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
lfr
Limosilactobacillus fermentum CECT 5716
Pathway
lfr03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LC40_0114
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lfr03400
]
LC40_0114
Enzymes [BR:
lfr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
LC40_0114
DNA repair and recombination proteins [BR:
lfr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
LC40_0114
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
SpoU_sub_bind
Exo_endo_phos_2
Motif
Other DBs
NCBI-ProteinID:
ADJ40780
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Position
192710..193549
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AA seq
279 aa
AA seq
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MRFISWNIDSINAALTGTSARAEETRAVLEKIKAAAPDVIAIQETKLSKSGPTKKHQGVL
AELFAGYTVVWRSSVEPARKGYAGTMYLYKESLTPKVTYPTIGAPEPMDKEGRIITLEFE
NFYLTEVYTPNSGTGLKRLAERQEWDDRYREYLTELDRQKPVIASGDFNVAHEEIDLAHP
ANNHHSAGFTDEEREKFTALLAAGFTDSFRSLHPDETGAYSWWAQRAVTSKVNNSGWRID
YWLVSDRLADQVVSSTMIDSGERRDHAPIQLDINIPAAD
NT seq
840 nt
NT seq
+upstream
nt +downstream
nt
atgcgctttatttcatggaacattgattcaatcaacgctgctttaaccggcacctcggct
cgggccgaagaaacccgcgccgttttggaaaagatcaaggcggccgctccggacgtgatc
gccattcaagaaaccaagctctccaagagtggaccgactaaaaagcaccagggagttttg
gcggagctgtttgccggttacacggtcgtttggcgctcctcggtcgagccagcgcgcaag
gggtacgctgggacaatgtacctatataaggaaagtttgacccccaaggtgacctaccca
acgattggggccccggagccaatggacaaagaggggcggattatcaccctggaatttgaa
aacttctatttgaccgaggtttacaccccaaactccgggaccggactcaagcgattggcc
gaacggcaagaatgggatgaccgctaccgggagtatttaaccgaactagatcgacaaaag
ccggtgatcgccagtggcgatttcaacgtggcccacgaggaaatcgatttggcgcacccg
gctaataaccatcactcggccggctttaccgatgaggaacgagagaagttcacggccctg
ctggcggccgggtttaccgactcctttaggtccctacacccggacgaaaccggggcttac
tcctggtgggcgcaacgggcggtcaccagtaaggtgaataactccgggtggcggattgac
tactggctagttagcgaccgtttggccgaccaagttgtttcgtcaacgatgatcgattcc
ggtgaacgacgcgaccacgcccccattcaattagatatcaacattccggctgccgattag
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