Limosilactobacillus fermentum CECT 5716: LC40_0131
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Entry
LC40_0131 CDS
T01958
Name
(GenBank) DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
lfr
Limosilactobacillus fermentum CECT 5716
Pathway
lfr03420
Nucleotide excision repair
lfr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LC40_0131
03430 Mismatch repair
LC40_0131
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lfr03400
]
LC40_0131
Enzymes [BR:
lfr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LC40_0131
DNA repair and recombination proteins [BR:
lfr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LC40_0131
MMR (mismatch excision repair)
Other MMR factors
LC40_0131
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
AAA_30
Viral_helicase1
AAA_16
NACHT
DEAD
AAA_11
UvrD_C
DUF3828
Motif
Other DBs
NCBI-ProteinID:
ADJ40792
LinkDB
All DBs
Position
complement(222593..224149)
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AA seq
518 aa
AA seq
DB search
MFDTNETVGDAMLQAALGRQNDQTMQNIVATIQKEQNDIIRNTTADLMVVQGVAGSGKTS
AILQRIAYLLYHARESLNADQIVLFSPNLLFSHYIASVLPSLGERNMRQVTLPNFLARRF
EGLQVESLFDRYETRQQSNAPHPVADWLEGAASMAAVKDYVDQLANSQAPLQFADLTFEG
RTLFTKEAIASIYHHQVAKMTVADRLVKVKNALLRRLQHLATTEAKRDWVAKELDTLSNQ
ELHALYGQKTIDDFADEQAQAAYLARRWAKKRLRVVADAIYNNYFLDFHALYRQFLLHLP
LTGPITEAVQQQLATDFSHGVEFHRIKLVHTAPFLYLRDLLTGGGQNRSFQYVFIDEMQD
YSLATLIYLKHAFPDAKFTVIGDAEQALFKPLELPETLLNRVGDALAAKHPRLIALRRSY
RSTFEITTFAKSLLPDGDEITAFARHGDPAKLQVHYGQAAWQTGLIKAVQAMQQRFPTVA
VLTRDQEEAXQVYHHLYGQVTDLHRLSEEDSQLPQWGS
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atgtttgacaccaatgaaacggtcggcgacgccatgctgcaagcggccctggggcggcaa
aacgatcagacgatgcaaaacatcgtcgccacgatccaaaaggaacaaaacgacatcatt
cgaaacaccaccgccgatttgatggtggtccaaggggtggccggctccgggaagacctcg
gcgatcctccagcggattgcttacctgctctaccacgcccgtgaatcgctgaacgccgac
caaatcgtcctcttctcacccaacctcttgttctcccactacatcgcttcggtcctgccc
tcgcttggtgaacgtaacatgcgccaggtaaccctgcctaacttcttagcccgccgcttt
gaagggctacaagttgaatcactctttgaccgctacgaaacccgccagcaatccaatgcc
ccccacccggtagcggattggttggagggcgccgctagcatggccgccgtcaaggactac
gtcgaccaactggccaacagccaagcccccctccagttcgccgacctgacctttgaaggg
cgcaccctgtttaccaaagaagcgatcgccagcatctatcaccaccaggtcgctaaaatg
acggtggccgaccggctagttaaggtcaaaaacgccctgctccgccgccttcagcaccta
gctaccaccgaagccaagcgcgactgggtggccaaagagctcgacaccctgtccaaccaa
gagcttcacgccctctacggccaaaagacgatcgatgactttgcggatgaacaggcccaa
gccgcctacctagcccgccgctgggcgaaaaaacggctccgggtggtcgccgacgccatt
tacaacaactactttttggactttcacgccctctaccgccagttcctgcttcacttgccc
ctgaccggccccatcacggaagcagtgcaacagcaactggccaccgactttagtcacggc
gttgaatttcaccggatcaagctagtccacaccgctcccttcttatacctgcgcgacctt
ttgaccggtggggggcaaaaccgcagtttccaatacgtcttcattgacgagatgcaagac
tactcgctggcgaccttgatctacctcaagcacgcctttccggacgctaagtttaccgta
attggcgacgccgagcaggccctcttcaaaccgctcgagttaccagaaaccctcttgaac
cgggttggcgacgccctagcggctaagcacccccgcttaattgccctacgccgctcttac
cggtccacctttgaaatcaccaccttcgccaaatccctgttgcccgacggcgatgaaatc
accgccttcgcccgccacggggacccggccaagcttcaggttcattacgggcaagcggcc
tggcaaaccggcttaatcaaggcggtccaagccatgcagcaacgatttcccaccgtcgcc
gttttgaccagggatcaagaagaggccakccaggtttaccaccacctctacggccaagta
actgacctgcaccgcctgagcgaagaagacagccagctcccccagtgggggtcttga
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