Limosilactobacillus fermentum CECT 5716: LC40_0151
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Entry
LC40_0151 CDS
T01958
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lfr
Limosilactobacillus fermentum CECT 5716
Pathway
lfr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lfr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LC40_0151
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lfr03019
]
LC40_0151
03009 Ribosome biogenesis [BR:
lfr03009
]
LC40_0151
Enzymes [BR:
lfr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LC40_0151
Messenger RNA biogenesis [BR:
lfr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LC40_0151
Ribosome biogenesis [BR:
lfr03009
]
Prokaryotic type
rRNA helicases
LC40_0151
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
ResIII
AAA_22
DUF1087
Motif
Other DBs
NCBI-ProteinID:
ADJ40812
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All DBs
Position
255843..256658
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AA seq
271 aa
AA seq
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MYFSELGLSNKLLKAIQRSGYEEATPIQEQTIPMVLAGKDVIGQAQTGTGKTAAFGLPTI
EHVDVENPAIQTLIISPTRELAIQTEEELFRLGKEKRVKVQVVYGGADIRRQIRSLEKNP
QILVGTPGRLRDHLRRGTVDLSGVQTLVLDEADEMLNMGFLEDIEDIIKQTPSERQTLLF
SATMPPEIKRIGVQFMHDPQTVKIKAKELTTDLVDQYYVRAKDYEKFDIMTRMIDVQDPD
LTIVFGRTKRRVDELSRGLIARGYERRRDSR
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
ttgtattttagtgaattaggtttatccaacaagttgctcaaggcgatccaacgctccggt
tacgaagaggccacgccgatccaagaacaaacgatcccgatggtcttagccggcaaggac
gtgatcggccaggcccaaactgggactgggaagacggcagcgtttggcctgccaaccatt
gagcacgttgacgtggaaaacccggcgattcaaaccctgatcatctccccgacccgggag
ttggccatccaaaccgaagaggaactcttccgcctcggtaaggaaaagcgcgtgaaggtc
caagtggtttacgggggcgccgatatccgccgccaaatccgttccttagaaaagaatccc
caaatcctggtcgggacgccggggcggttgcgtgaccacttgcgccgcggaacggtcgac
ttatctggggtgcaaacactagtcttagacgaagccgatgaaatgttgaacatgggcttt
ttagaagacatcgaagacattatcaagcaaacgccaagcgaacgccaaaccctgctcttt
tcggccaccatgccgccggaaattaagcggattggggttcaatttatgcacgacccgcaa
accgttaagatcaaggctaaggaactgaccaccgacctggtggatcagtactacgttcgg
gccaaggattacgagaagtttgacatcatgacccggatgatcgacgtccaagacccggac
ctgacgatcgtctttggccggaccaagcgtcgggtcgatgaactatcccgcgggctgatt
gcccggggctacgaacgccgccgggattcacggtga
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