Limosilactobacillus fermentum CECT 5716: LC40_0153
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Entry
LC40_0153 CDS
T01958
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lfr
Limosilactobacillus fermentum CECT 5716
Pathway
lfr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LC40_0153
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lfr03400
]
LC40_0153
Enzymes [BR:
lfr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LC40_0153
DNA repair and recombination proteins [BR:
lfr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LC40_0153
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
ADJ40814
LinkDB
All DBs
Position
260910..264251
Genome browser
AA seq
1113 aa
AA seq
DB search
MKTCLVRTRSLPFRSKRCWQPKWRPLHLTTACNGFRPSIPFLADQAAVVVTDAAGLRRRL
PKPGDFQAATLTVEVGGELDPTTVGTQLMAMGYQRQKMVLKPGDFAMRGSIVDIYALNTA
HPVRIDLFDTEVDSLRYFDAESQRSVENIRAVTILPATDFIAPPAKLAQLKGELQDDYHH
LAQTADEEERQALFGLFDPVISALDAGQLPVEMLEYADRVYEQPASLLDYLPAKSNLVLD
DWGRIKEGAKRITEQETAWLMDKVAAKHRVRGATLDNGVMETLPKRPGPQTYLALFQKGL
GQVKLAQISDLATREMQRFFSQLDLLKGELKRWQSQGATVVIMANSPERRNQVATTLADF
GVAVVQTAPDQLMEHQVQLVAATLANGFEMPPANLVVITEAEMFKQVKNRRPRAQKLANA
ERIKSYTDLKPGDYVVHVNHGIGLFAGIKTMEVDGVHQDYMVLDYRDNAQIFVPVTQLNL
VQKYVSAESKTPRLNRLGGVEWAKTKRRVAAKIEDIADDLVDLYAKRETEKGFAFPKDDY
LQEKFDDEFPYAETKDQLQSIQEIKADMERPRPMDRLLVGDVGYGKTEVALRAIFKAVAG
GKQVAFLVPTTILAQQHYDTMKARFEGFPVTIALMSRFKTAKELKETDRGLLNGEIDIVV
GTHRILSKDVQFKDLGLLIVDEEQRFGVKHKERLKQLKANVDVLTLTATPIPRTLHMSMM
GVRDLSVLETPPTGRYPIQTYVLEQNGAVIRDGILREMQRGGQVYYLHNRVHDIERVVAQ
LAELVPEARIGYIHGQMSENELEGVLYDFIRGEYDVLVTTSIIETGVDIANVNTLFVEDA
DRLGLAQLYQIRGRIGRSNRVAYAYFMYQENKVLTEQGEKRLAAIRDFTELGSGFKIAMR
DLSIRGAGNLLGKQQHGFIDSVGYDLYTEMLADAVATKQGKKRPVKSNAEVELGVEAYLP
STYVDDQRQKIELYKQIRRAKSEEELTELAGDLIDRFGDYQTPVANLLTIGTIKLYADQA
MLSEIERKRDNIYVNFTVVGSKKINAPQIIQALAKTRFKATMDEKEDGAISLRLVIQPKM
TEQDWLNQLLALTRELGQRVQEANNEQEGETKQ
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaacctgcttggtgaggaccaggtctttgcctttccggtcgaagaggtgttggcaa
ccgaagtggcgaccgcttcacctgactaccgcttgcaacgggttcaggccctcaataccc
tttttggcagaccaagcggccgtcgttgtgacggatgcggcgggtctgcgccggcgcctg
cccaaaccgggggatttccaagccgccaccctgacggtcgaagtcgggggtgaacttgat
ccaactacggtggggacccagttgatggcgatgggctatcagcgccaaaagatggtctta
aaacccggggactttgccatgcgggggtcgattgtcgacatttacgccctgaacacggcc
cacccggtgcggatcgacctctttgacaccgaggtggattccctacgctactttgacgcc
gaaagccagcggagcgttgaaaacatccgggcggtgacgatcttgcccgctaccgatttc
atcgccccacccgccaagttagcccagctaaagggggagctgcaagacgattaccaccac
ttagctcaaacggcggatgaagaggaacgccaggccctgtttggcctctttgacccggtc
atctccgctttggacgcggggcagttaccagtggaaatgctggagtacgccgaccgggtg
tacgaacagccggcctccttgctcgactacctacccgcgaaaagcaacctggtcttagac
gactgggggcggattaaggagggagccaagcgaattacggagcaagaaactgcctggttg
atggataaggtggccgctaaacaccgggtcaggggcgccacccttgataacggggtgatg
gaaaccctacccaagcgaccgggcccccagacctacctagccctctttcaaaaggggctt
ggacaagtcaaactggcgcagatctctgacttagcaacgcgggagatgcagcgcttcttt
tcccaattggaccttttaaagggtgagctcaagcgctggcagtcccagggggcaacggtt
gtgatcatggccaacagcccggaacgtcgaaaccaagtcgccactaccctagcagacttt
ggggtggcggttgttcaaacggcgcccgaccagctaatggaacaccaggtccagctggtg
gcggccaccttagctaacggatttgaaatgcccccggccaacttggtggtgattaccgag
gcggaaatgttcaaacaggttaagaaccgccgtccacgggcccagaagttagcgaatgcc
gagcggatcaagtcctacaccgacttaaagccgggcgattacgtggtccacgtgaaccac
gggattggcctgtttgccgggattaagacgatggaagtcgatggcgttcaccaggattac
atggtgttagattaccgcgacaacgcccagatcttcgtgccagttacccagttaaacctg
gttcaaaagtacgtttcggctgaatcaaagacgccccgcttaaaccgcttagggggcgtt
gagtgggccaaaaccaagcggcgggtggcggccaaaattgaagacattgccgacgacttg
gtcgacctttacgccaagcgcgagaccgaaaagggctttgcctttcccaaggatgactac
ttgcaagagaagtttgacgatgaattcccgtacgccgaaactaaagaccaactacaaagc
atccaggaaattaaggctgacatggaacgcccgcggccaatggaccggctcttagtcggt
gacgttggttacggcaagaccgaggtcgccctgcgtgccatcttcaaggccgttgccggg
ggcaagcaggtcgcctttttggtccccaccaccatcttagctcagcagcactacgacacg
atgaaggcccgctttgaaggctttccggtcacaattgccctgatgtcacgctttaagacc
gccaaggaattaaaggagaccgaccgggggcttttgaacggcgaaattgatatcgtggtg
gggacccaccggatcttatctaaagacgtccagtttaaggacctggggctcttgattgtt
gacgaagaacagcgctttggcgtcaaacacaaggagcgcttaaagcaactcaaagccaac
gtcgatgtcttaaccctgacggcgacgcccatcccgcggaccttgcacatgtcgatgatg
ggggtgcgggacctgtccgtcttagagaccccgccgacgggccgttacccgattcaaacc
tacgtcttggaacaaaacggcgccgtgattcgggatgggatcctgcgcgaaatgcaacgg
ggcgggcaggtctattacctgcataaccgggttcacgacattgaacgggtggtcgcgcag
ttagcggagctggttcccgaagcccggattggctacattcacggccagatgagtgaaaac
gagttggaaggggtgctgtacgattttatccgcggtgagtacgacgtcttagtaaccacc
tcgatcatcgaaaccggggtcgatatcgctaacgttaacaccctctttgtcgaagacgcc
gatcgcttggggctagcccaactttaccagattcgggggcggatcggtcgcagcaaccga
gtggcttacgcttacttcatgtaccaggaaaataaggttctaactgaacagggtgaaaag
cggttagctgccattcgggacttcaccgagctagggtcgggctttaagattgccatgcgt
gacctgtcgatccggggggccggtaacctcctgggtaagcagcagcacggtttcatcgat
tcggttggttacgacttgtacaccgagatgttagctgatgcggtggccaccaagcaggga
aagaagcgaccggttaaatcgaacgccgaagtcgagctcggagtcgaagcctacttgcca
agtacttacgtcgacgatcagcgccaaaagatcgaattgtacaagcagattcgccgggcc
aagagtgaagaagaactgaccgaattggctggtgacctaattgaccgctttggggactac
caaacgccggtggcgaacttattaacgatcgggacgatcaagctgtacgccgaccaagca
atgctaagcgaaattgagcgcaagcgcgataacatttacgtcaactttacggtggttggt
agtaaaaaaatcaacgccccacaaattatccaggccctggccaagacccgctttaaggcc
accatggatgaaaaagaggacggcgccatttccttacggctggtaatccaaccaaagatg
acggaacaggactggttgaaccagctactggcgcttaccagggaattgggtcagcgagtg
caagaagcaaacaatgaacaagaaggggaaaccaagcaatga
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