Limosilactobacillus fermentum CECT 5716: LC40_0205
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Entry
LC40_0205 CDS
T01958
Name
(GenBank) DNA-directed DNA polymerase
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
lfr
Limosilactobacillus fermentum CECT 5716
Pathway
lfr03030
DNA replication
lfr03430
Mismatch repair
lfr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LC40_0205
03430 Mismatch repair
LC40_0205
03440 Homologous recombination
LC40_0205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lfr03032
]
LC40_0205
03400 DNA repair and recombination proteins [BR:
lfr03400
]
LC40_0205
Enzymes [BR:
lfr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LC40_0205
DNA replication proteins [BR:
lfr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LC40_0205
DNA repair and recombination proteins [BR:
lfr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LC40_0205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNAX_ATPase_lid
AAA
DNA_pol3_gamma3
RuvB_N
AAA_30
AAA_5
AAA_22
TIP49
AAA_assoc_2
AAA_19
AAA_7
AAA_16
AAA_2
AAA_24
AAA_14
Rad17
AAA_18
Mg_chelatase
Gon7
RNA_helicase
Motif
Other DBs
NCBI-ProteinID:
ADJ40855
LinkDB
All DBs
Position
354051..355742
Genome browser
AA seq
563 aa
AA seq
DB search
MSYQALYRVWRPQRFSDLVGQQIVSTTLKNAIITKKISHAYLFAGPRGTGKTSAAKIFAK
AVNCHHQTDGEPCNECELCQAITAGQLNDVIEIDAASNNGVEQIRDIRDKVKYAPTQADY
KVYIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRVQRFDFRRISA
KDAFERMKYILDQKKVAYQEDALWVIANAAEGGMRDALSILDQALSFGDEQVTIDDALLV
TGSVTKQLVQEYFLQVAKGDSAPALETLTKITGAGKDGQRFIEDLISFIRDVLLYQESPS
LIDLPATGLRKEDFDQLSGAASSTALYQMIDTLNDIQQEMRFTTHPDVYLEVLTVRLCQI
RGDERTQPGADQAELTQLRQAVAALQQEVNQLRQTPPAEVKTPAPRPSRSTSNKQALRIN
LAQVNLILTNATRPELENLKGLWGDMLSLLDNAQSSLINNSEPVAASPAGVVVSFDNNFL
FEQANGGNLGNAMGAALQQLTGSERQVVFVPKDKWPQMRQDFLVENGYLKKGTAKKEAPK
ATDPVVSQAEKLFGPDAIEVKND
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgagttatcaggcgctctaccgggtttggcgaccccagcggtttagtgacctcgttggt
cagcagatcgtttcgaccaccttaaaaaacgccatcatcaccaaaaaaattagtcacgcc
tacctctttgccggtccacggggaacggggaagacatcggcggcgaaaatttttgccaag
gcggtaaactgccaccaccaaacggatggggaaccctgcaacgagtgcgaactctgccaa
gcaatcacggcggggcaactaaatgacgtaattgaaatcgacgccgcttccaataacggg
gttgagcagatccgtgacattagagataaggtcaagtacgcccccacccaggctgactat
aaggtttatatcattgacgaagtccacatgttatcgaccggggccttcaacgccctcttg
aaaaccttggaggaaccgccagccaacgtgatctttattttggctactacggaaccgcac
aagatcccgctgacgatcatttcccgggttcagcgctttgattttagacgaattagcgca
aaggacgcctttgagcggatgaaatacatcctggatcaaaaaaaggtcgcctaccaagag
gacgccctatgggtgattgccaacgccgctgaggggggaatgcgggacgccttaagtatt
ctcgaccaggcactgtcctttggcgatgagcaggtgaccattgatgacgccttattggtg
accgggagtgtgaccaagcagctggtgcaggaatatttcctgcaagtagccaagggtgat
agcgccccggccttagagacccttactaagatcaccggggcgggcaaggacggtcagcgt
ttcattgaggacctgatctcctttattcgcgacgtcctcttgtaccaggaatcaccaagt
ttgattgacctaccggcgacgggcctacgtaaggaagattttgatcaactgagcggcgcc
gcaagttcgacggctctgtatcaaatgatcgataccctaaacgatatccaacaggagatg
cgctttacgacgcacccggacgtctacctagaagtgttaaccgtccggttgtgccagatt
agaggggacgaaagaacccagccaggtgctgaccaagcggaacttacgcagcttcgccag
gcggtagctgccttacaacaagaggttaatcagctacgccaaaccccaccagcagaggtg
aaaacaccggcgccaaggccgagccggtcgactagcaataaacaggcgttgcggattaac
ttagcccaggttaacttgatcttgaccaacgcaacccggcctgagttagagaatttaaag
ggcctgtggggagacatgctttccttattagataacgctcagagctcgttgatcaataat
tctgagccggtggctgccagtccggcgggggtcgtggtatcctttgataataacttcctc
tttgaacaggccaacgggggcaacctaggtaacgcaatgggggcggccctacaacagttg
accggtagcgaacgccaagtggtcttcgtgcctaaggacaagtggccccaaatgcgccaa
gacttcttagtggaaaatggttacttaaaaaagggaaccgctaaaaaggaggcccccaag
gcaactgatccggtagtcagtcaggccgaaaagttgtttggcccggacgcaattgaagta
aaaaacgattaa
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