Limosilactobacillus fermentum CECT 5716: LC40_0230
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Entry
LC40_0230 CDS
T01958
Name
(GenBank) 60 kDa chaperonin (Protein Cpn60) (groEL protein)
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
lfr
Limosilactobacillus fermentum CECT 5716
Pathway
lfr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lfr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LC40_0230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lfr03019
]
LC40_0230
03110 Chaperones and folding catalysts [BR:
lfr03110
]
LC40_0230
03029 Mitochondrial biogenesis [BR:
lfr03029
]
LC40_0230
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lfr04147
]
LC40_0230
Enzymes [BR:
lfr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
LC40_0230
Messenger RNA biogenesis [BR:
lfr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
LC40_0230
Chaperones and folding catalysts [BR:
lfr03110
]
Heat shock proteins
HSP60 / Chaperonin
LC40_0230
Mitochondrial biogenesis [BR:
lfr03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
LC40_0230
Exosome [BR:
lfr04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
LC40_0230
Exosomal proteins of other body fluids (saliva and urine)
LC40_0230
Exosomal proteins of breast cancer cells
LC40_0230
Exosomal proteins of colorectal cancer cells
LC40_0230
Exosomal proteins of bladder cancer cells
LC40_0230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
PhaC_N
SurA_N
Motif
Other DBs
NCBI-ProteinID:
ADJ40880
LinkDB
All DBs
Position
394255..395886
Genome browser
AA seq
543 aa
AA seq
DB search
MVKELKFSEDARSAMLRGVDKLADTVKTTIGPKGRNVVLEQSYGSPTITNDGVTIAKSIE
LEDHFENMGAKLVSEVASKTNDIAGDGTTTATVLTQAIVTEGMKNVTAGANPVGIRRGIE
KATAAAVEGLKKMSHDVKTKDDIAQIASISAANKEVGKLIADAMEKVGNDGVITIEDSRG
VDTSVDVVEGMSFDRGYMSQYMVTDNDKMEANLDNPYVLITDKKISNIQDILPLLQSVVQ
EGRALLIIADDITGEALPTLVLNKIRGTFNVVAVKAPGFGDRRKAQLEDIAVLTGGTVIS
DDLGMQLKDATIDQLGSANKVTITKDATTIVDGSGNKEAIAERVDQIKKAIAETTSDFDK
EKLQERLAKLAGGVAVVKVGAATETELKEKKYRIEDALNATRAAVQEGFVPGGGTALVNV
IPALDEVEASATGDEATGIKIVKAALEAPVRQIAENAGLEGSVIVNQLKQEKPGVGYNAA
DDKFEDMVAAGIVDPTKVTRSALQNAASVSALLLTTEAVVADKPQPADAAPQAPVAGGMG
GMM
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atggtaaaggaattaaagttctcagaagacgcacggagcgcaatgctgcgtggggttgat
aagttagcagacaccgtcaagacgacgattgggccaaagggacgtaacgtggtgttggaa
caaagttacggctccccgacgatcactaacgacggggtaacgatcgctaagagcattgaa
ttagaagaccacttcgaaaacatgggggctaagctggtttccgaagttgcttctaagact
aacgacattgccggggacgggaccacgacggccactgttttaacccaagcaattgtgacc
gaaggaatgaagaacgtgaccgccggcgctaacccagtgggcattcggcgcgggattgaa
aaggcgacggccgcagccgttgaaggcctgaaaaagatgagccacgacgttaagaccaag
gacgacatcgctcaaatcgcctccatttccgctgctaacaaggaagttggtaagttgatc
gccgacgccatggaaaaggttggtaacgacggggtcatcacgattgaagattcccgtggg
gttgatactagcgttgacgtggttgaagggatgagctttgaccgtggttacatgtcccaa
tacatggtaaccgacaacgacaagatggaagccaacctggacaacccgtacgttttgatt
acggacaagaagatctctaacattcaagacatcttgccactactccaatctgttgttcaa
gaagggcgcgccctgttaatcattgctgatgacatcactggtgaagcactgccaaccctt
gtgttgaacaagattcggggaaccttcaacgtagttgccgttaaggccccaggctttggt
gaccgtcgcaaggctcaattggaagacatcgccgttctgactggtgggaccgtgatttcc
gacgaccttggtatgcaattgaaggacgctacgattgaccaacttggttctgctaacaag
gttacgataaccaaggacgctaccacgatcgttgatggcagtggcaacaaggaagccatt
gcagaacgggttgaccaaatcaagaaggcgattgccgaaacgacctctgactttgacaag
gaaaagctccaagaacggctcgctaagttagccggtggggtggccgttgttaaggttggg
gccgctaccgaaaccgaactcaaggaaaagaagtaccggatcgaagatgccttaaacgcc
acccgggccgccgtgcaagaaggctttgttcctggtggtggaacggcactggttaacgtt
atccctgccttggacgaagtggaagcatccgcaactggcgacgaagcaaccgggattaag
attgtgaaggcggctctggaagccccagttcgtcaaatcgccgaaaacgccggtttggaa
ggttccgtgatcgttaaccagctgaagcaagaaaagccgggagttggttacaacgccgct
gatgacaagtttgaagacatggtcgctgccggaattgttgacccaacgaaggtcacccgc
tcggccctgcaaaacgcagcttccgtttccgccctcctcttgacgacggaagccgttgtt
gccgacaagccacaacccgctgacgctgcaccacaagcaccagtagccggtggtatgggc
ggcatgatgtaa
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