Limosilactobacillus fermentum CECT 5716: LC40_0412
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Entry
LC40_0412 CDS
T01958
Name
(GenBank) Exodeoxyribonuclease V alpha subunit
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
lfr
Limosilactobacillus fermentum CECT 5716
Pathway
lfr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
LC40_0412
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lfr03400
]
LC40_0412
Enzymes [BR:
lfr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
LC40_0412
DNA repair and recombination proteins [BR:
lfr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LC40_0412
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_30
AAA_19
SH3_13
UvrD_C_2
OB_YrrC
HHH_RecD2
AAA_11
Viral_helicase1
UvrD-helicase
nSTAND3
T2SSE
AAA_16
PIF1
AAA_12
UvrD_C
NPHP3_N
SLFN-g3_helicase
AAA_28
AAA
RsgA_GTPase
AAA_29
AAA_22
NTPase_1
AAA_18
TsaE
ABC_tran
Rad17
AAA_17
Motif
Other DBs
NCBI-ProteinID:
ADJ41035
LinkDB
All DBs
Position
695915..698461
Genome browser
AA seq
848 aa
AA seq
DB search
MAYRDYTQPVIHDEKVQETGPTHFSGRVRKVIFSNPPFAILAVTVLKADFEWDTEEITVK
GDVGQVNEGDEFEFEGQVVNNPRYGFEFDFSGFVHQLPHDAKELAAFLKKNNVAVSDEKK
VAKAIDDALGEKAMSTLIGDADAIEVVSGLSQKDIATLKTFFNRLVKDDEASKANRQLMM
LGFSAWMIRRLQEFYQRRLLKILEEDIYQVVADYEQLGISFRPVDEAARQYQDVAFDDPR
RIDGALLFAAQILIRENSGSYVAPQLLLNRASQLLNQGATVSQDTLAARLGILLTQKKLY
HVPERGIYPALFFHAENLIASQLHQMMAAAQPVSAKRQKLIEKIVDQVAKEQKITYDDQQ
KAAIKQALEAPVLLLTGGPGTGKTTILNGIVRAYRRLLKEDGQKLHAWSDGEPIQLVAPT
GRAAKQARQAITGEGVAASTIHHFLSIATDNDAARLIEKPAPLENAGQMLVVDEMSMTST
LLMGGLMAVIPTNIHLVLVGDFDQLPSVGPGQVFRDLLESNCLPQVRLERIYRQDADSSL
IPLAQRINKGDVDEDFIAPTPKTKYPKRIFVTTAARDVPARIGQLVDAYLGGHDLDIQDI
QILTPLRRHRDLINSYLQDHLNPASLNQATYRLRSRELRVGDKVMQTTNDSDAEVYNGDI
GIIKSIAGKDKHVVNGDRLAKKEKVHLKVTVDFAGHLVKYDDPTALANLELAYAMTIHKA
QGSQAPVVIVTLLSEFFPTNPQAGSIIQRNLLYTAVTRSSRALVMVGDAPAFVRCSKTPV
VDRPTSLKQRLKLVWQAAQQDPDSPADEKAQTPVQEEQPADHLTPAMVEDERVDPLIGMD
GLSPADFA
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atggcgtaccgggattatacccagccggtaattcatgacgaaaaggtccaagaaacggga
ccaacgcatttttcggggcgggtacgaaaagttatcttttctaacccgccctttgctatt
ttagcggtgacggtgttaaaggctgactttgagtgggacaccgaagaaatcaccgttaag
ggtgacgttggtcaagttaacgagggcgatgagtttgaatttgagggtcaggttgtcaac
aacccgcgctacggctttgagtttgatttttcgggctttgtccaccagctgcctcacgac
gccaaggagctggccgcctttttaaagaagaacaacgtggcggtcagtgatgagaaaaag
gtggccaaggccattgatgacgccttaggcgaaaaggccatgagcaccctgattggcgac
gccgacgcaatcgaagtggtgtccgggttgagtcaaaaagacatcgcgaccttaaagacc
tttttcaaccggttggtcaaagatgacgaggccagcaaggccaaccgccagttgatgatg
ctcggtttctcggcctggatgatccgccgcttgcaggaattctaccaacggcggttgctt
aaaatcctcgaagaagacatttaccaagtggtagccgattatgagcagttggggattagt
tttcgcccggtggatgaggcggcacgccagtatcaagacgtggccttcgatgatccccgc
cgcatcgatggggctctcctctttgccgcccaaattctgattcgggaaaattccggctcg
tacgtcgccccgcaattactgttgaaccgggctagccaactccttaaccagggcgccacc
gtcagccaggataccctggcggcgcgtttgggaattttactgacccaaaagaagctttac
cacgtgcccgagcggggaatctacccggccctgttctttcacgccgaaaatttaattgcc
agtcagcttcaccagatgatggcggcggcccagccggtcagcgccaagcggcaaaagctg
attgaaaagatagttgatcaggtggccaaggaacaaaaaatcacttacgacgaccagcaa
aaggcggcgattaaacaggccttagaagcaccggtgctgctcttgaccgggggaccgggg
accgggaagacgacgattctaaacgggatcgtgcgggcataccggcgcctgttaaaagag
gacggccaaaagctccacgcttggagcgatggggaaccaattcagttagttgcccccacc
gggcgggcggctaagcaagcccgccaggcgatcacgggtgagggcgttgccgcgtcaacc
atccaccacttcttgagcattgcaaccgataacgatgccgcccgtttgattgaaaaaccg
gcgcccctagaaaatgccggtcagatgctggtggttgacgaaatgtcgatgacctccacc
ctcttgatgggggggctaatggcggtgatcccgaccaacatccacttagtgttagtcggt
gacttcgatcagctgccgtcggtgggaccggggcaggtgttccgggacttgctcgaatct
aattgcttaccgcaagtccgcttggaacggatttaccgccaggacgccgattcctctttg
atcccgttagcccagcggatcaacaagggggacgttgacgaggacttcattgcccccacc
ccaaagactaagtaccccaagcgaatctttgtgaccaccgccgctcgcgacgttccggcc
cggattggtcagctagtcgacgcctacttgggtggtcacgacttggatattcaagatatt
cagatcttaaccccgctacggcgccaccgcgacctgattaatagctacttgcaagaccac
ctgaatccggccagcttaaaccaggccacttaccggttacgaagccgggagctacgggtg
ggcgacaaggtaatgcagacaacgaacgactccgacgccgaggtttataacggtgacatc
gggatcatcaagtcgattgccgggaaagataagcacgtcgttaacggcgatcggctcgcc
aaaaaggagaaggtgcacctgaaggtcacggtcgactttgctggccacctggttaaatac
gatgaccccaccgccctggctaacttagaactggcctacgcgatgacgattcacaaggcc
caggggagtcaggcgccggtcgtgattgtgaccttgctgtcggagtttttcccgactaac
ccccaggctggttcaatcatccaacgtaacctcttgtacacggcagtgacccggtcgtcg
cgggctctggtgatggtgggtgacgccccggccttcgtgcgttgctctaagacgccggtg
gtggaccgccccacctcgctcaagcagcgactgaagttggtttggcaagcagcccagcag
gatccagactccccggcagacgagaaagcccagacgccggttcaagaagaacaaccagcg
gatcacttgacgccggcaatggtggaagacgaacgggtggacccgctgatcggcatggat
ggattaagtccggccgactttgcctaa
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