Limosilactobacillus fermentum CECT 5716: LC40_0576
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Entry
LC40_0576 CDS
T01958
Name
(GenBank) DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lfr
Limosilactobacillus fermentum CECT 5716
Pathway
lfr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lfr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LC40_0576
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lfr03019
]
LC40_0576
03400 DNA repair and recombination proteins [BR:
lfr03400
]
LC40_0576
Enzymes [BR:
lfr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LC40_0576
Messenger RNA biogenesis [BR:
lfr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LC40_0576
DNA repair and recombination proteins [BR:
lfr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LC40_0576
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
HEM4
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ADJ41187
LinkDB
All DBs
Position
1028197..1029654
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AA seq
485 aa
AA seq
DB search
MTIDEQQVRTALKRFFGFADFRPGQRETIEATLAGKPTLAVLPTGAGKTLLYQLPGVMLD
GLVVVIAPLISLMQDQVDRLRSDGLGPVASLNSSLDYQEQQWVLSHLGELKFLFTSPETL
LKPAVLRALHRQPISLFVVDEAHCVSQWGPDFRPEYLRVAQAIQAVNPARLLMLTATATP
AIQDDIIQRLGLNPAAVVRVVKSVNRPNIFLAVQKLADQDEKRRRLLELVNQLGPSGVVY
LSSREGANQLADWLNQQANLRVAAYHAGVDPVDRYRIQQQFLGGELDLVVATSAFGMGID
KQDIRYVIHFQMPGSLEAYVQEIGRAGRDGRQSLAVLLYCHGDEQLPLLLNHVDLPSPAV
LDQIKAGKVKADLLGEAKRVVTYYLDQGMDGQAVWRFFADLEQKRGRQVQRMLSYVEEDK
CRRTNLLAYFGQASLEAEVEWCCDLTNRDWTVTALQLPAVKRRVASSVLDWRNRVATLFN
RQGLG
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
gtgaccattgatgaacaacaagtccgcaccgcactgaaacggtttttcggtttcgctgac
tttcgtcccggacaaagggagacgattgaagcgacgttggcggggaagccaaccctggcc
gtcttgccaaccggggccggcaaaaccctcctttaccaactcccgggggtaatgttagac
ggcttggtggtggtcatcgcccccctgatttccttgatgcaagatcaagttgatcgcctg
cgtagcgatggcttagggccggtggcgagcctcaattctagcctcgattaccaagagcaa
cagtgggtgctgagccacctaggggagcttaagtttttgtttacttccccggagaccttg
ctcaagcccgccgtattaagggcattgcaccgtcaaccgattagcctgtttgtcgtcgat
gaggcccattgcgtttcccagtggggccctgattttcgtccggaatacctccgggttgcc
caggccattcaagcggttaaccccgcgcggctattgatgctgacggctacggccaccccc
gcaatccaagatgatatcattcagcgtctaggcctcaatccggccgcggtggtgcgggtc
gttaaatcggttaatcgccccaatattttcctggccgtccaaaaactagctgaccaagac
gaaaagcggcgccgccttctcgaactggtcaaccaattagggcccagtggggtggtctac
ctctccagccgtgagggggccaaccaattggcggactggttaaatcaacaagccaactta
cgggtggcggcttaccacgccggggttgaccccgttgaccgctaccgaattcagcagcag
ttcttaggtggagaattggacctagtggtggccacgtcggcctttgggatggggattgat
aaacaagacatccgttacgtgatccactttcagatgccggggagtttagaagcgtacgtc
caagagattggtcgggctggtagagatggccgccagtccttagccgtgctcttatattgt
cacggtgatgagcagttgccactcttgttaaaccacgtcgatttaccaagccccgccgtc
ttagatcaaatcaaggcgggcaaggtgaaggccgatcttttaggggaggctaagcgcgtg
gtcacctactacctggaccagggaatggacgggcaggcggtgtggcgcttttttgcggac
ctagaacaaaagcggggccgccaggtgcaacggatgttaagttacgtcgaggaagacaag
tgccggcgaactaatttactagcctactttggccaagcaagtctggaggcggaggtcgag
tggtgttgtgacctgaccaaccgggactggacggtgaccgctttgcaactgcccgcggtc
aaacggcgagtggcttcgtccgtcctcgattggcgaaaccgggtcgcaactttgttcaac
cgacaggggttgggctag
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