Limosilactobacillus fermentum CECT 5716: LC40_0840
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Entry
LC40_0840 CDS
T01958
Name
(GenBank) DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
lfr
Limosilactobacillus fermentum CECT 5716
Pathway
lfr03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LC40_0840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lfr03400
]
LC40_0840
Enzymes [BR:
lfr01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
LC40_0840
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
LC40_0840
DNA repair and recombination proteins [BR:
lfr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
LC40_0840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
DZR
Auto_anti-p27
Zn_ribbon_3
Ribosomal_S13
Zn_Ribbon_TF
Zn_ribbon_6
DNA_ligase_ZBD
Zn_ribbon_8
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
ADJ41430
LinkDB
All DBs
Position
complement(1496007..1496846)
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AA seq
279 aa
AA seq
DB search
MPEMPEVETVRRGLMRIAAGRQIKGIDVNYGKTIENDVEEFRQALIGQTIERIDRRGKYL
LFRFSNDLTMVSHLRMEGSYFNQPTGAEVDKHTHVIFHFTDGTDLCYRDTRKFGRMHLVK
TGEEMTVGGLKTIGPEPTEEDFQFDYFKQILKKSRSKIKPFLLDQSHVAGLGNIYADEVL
WQTQINPEQPANSLTDDQIKRLRENIIAEIARATAGHGTTVHTFKNAFGDAGQFQNELQA
YGHSGDACPRCGTKLVKIKVAQRGTTFCPHCQALVEPDD
NT seq
840 nt
NT seq
+upstream
nt +downstream
nt
atgccagaaatgccagaagttgaaaccgtgcggcgggggttaatgcgaatcgcggccggc
cgtcagatcaaggggattgacgtcaattacgggaagacgattgaaaatgacgtcgaggag
tttcgccaggccttgatcggccaaaccatcgaacgaatcgaccgccgggggaagtacttg
ctcttccgcttttccaacgacctgacgatggtctcccacctacggatggaggggagttac
tttaaccaaccgaccggcgccgaagttgataagcacacccacgtgatttttcacttcacc
gacggcaccgacctgtgctaccgcgacacccgtaagtttgggcggatgcacctggttaaa
accggggaagaaatgacggtcggcgggctgaaaacgatcggcccggaaccaactgaagag
gactttcagtttgattacttcaagcagatcctcaagaagagccggagcaagattaagccc
ttcttgttggatcagtcccacgtggccgggttaggaaacatctacgctgacgaagtcctt
tggcaaacccaaattaaccccgagcaaccggctaattcgctgactgacgatcaaattaag
cgcctgcgcgaaaacatcatcgcagaaatcgcccgggccacggcgggccacgggacgacc
gtccacacctttaaaaacgccttcggggacgctggtcaattccaaaatgaactccaggct
tacgggcacagcggtgacgcttgcccgcgctgcggcaccaagctagtcaaaattaaggtg
gcccagcgggggacgactttttgtccgcactgccaagcgctggtggaaccagatgactaa
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