Limosilactobacillus fermentum CECT 5716: LC40_0942
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Entry
LC40_0942 CDS
T01958
Name
(GenBank) TrmA family tRNA (Uracil-5-)-methyltransferase
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
lfr
Limosilactobacillus fermentum CECT 5716
Brite
KEGG Orthology (KO) [BR:
lfr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lfr03009
]
LC40_0942
Enzymes [BR:
lfr01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
LC40_0942
Ribosome biogenesis [BR:
lfr03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
LC40_0942
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_15
Methyltransf_25
Cons_hypoth95
MTS
PrmA
TRM5-TYW2_MTfase
Methyltransf_11
Methyltransf_12
N6_N4_Mtase
UPF0020
RrnaAD
Methyltransf_23
Ubie_methyltran
Methyltransf_32
CMAS
SPMIP4-like
Methyltransf_4
Motif
Other DBs
NCBI-ProteinID:
ADJ41513
LinkDB
All DBs
Position
complement(1673995..1675404)
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AA seq
469 aa
AA seq
DB search
MSKVQLPVHKNETVTGTVLDLTYQGNGVVKVDHYPIFVPNTLPGEEVTVKVTKVTKNFAW
GKLISIEKKSPDRIDDPNWAYLQTGIAPLGNLTYPAQLKFKQRQIQELLEKAHLNLEVAE
TLGMDQPFGYRNKAQVPVRMVKGQPTTGFYKRGSHDLVPIEDFYIQDPAIDQTVLVVRDL
LRKYQVPAYDEETHRRVIRTVMVRRGYYSHQVMVVLVTNGEHFPHVAEITREISERVPGI
KSIVQNVNDKRTNVILGTKNHLLWGEPTIHDTLLGIDFTISPLSFYQVNPQQTERLYQTA
IENAGLDGSKTVIDAYCGIGTISLAVAKHAKHVYGVEIVPAAIADAKQNAANNGIENATF
VVGKAEEQFAKWQAEGLKPDVVIVDPPRKGLDAQLIEATGKMAPQKVIYVSCNPATLVRD
LQRFAEQGYHVTKPIQPVDQFPQTTHVESVTVLERTEKLPNPSCHRIXH
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaggtgcaactaccagttcataaaaacgaaacggtcacggggacggtcctcgac
ctgacttaccaagggaacggggtcgtcaaggttgatcactaccccatttttgtgcccaac
accttgccgggcgaagaggtaacggttaaggtaactaaggtgaccaagaacttcgcctgg
ggcaagctgatcagcattgaaaagaagagcccggaccggatcgatgaccccaactgggcc
tacctacagacggggattgcgccgttagggaacctgacttacccggcccaactcaagttt
aagcagcgtcaaattcaagaactcttggaaaaggcccacctaaacttagaagtggccgaa
acgctggggatggaccagccctttggttaccgcaataaggcccaagtcccggtgcggatg
gtcaagggccaaccgacgaccggtttttacaaacgtggtagccatgacctggtgccaatt
gaagacttttacatccaggacccggcaattgaccaaaccgttttggtggtccgcgacctc
ttgcgtaagtaccaagtgccggcttacgatgaagaaactcaccgccgcgtaatccggacg
gtgatggtccgccggggctactacagccaccaggtgatggtggtcctggtcactaacggg
gagcatttcccgcacgtcgcagaaattacccgggaaataagtgaacgggtgccgggaatt
aagagcatcgtgcaaaacgtcaatgataagcggaccaacgtcattttgggaacgaagaac
cacctgttgtggggggaaccaaccatccacgacaccctcttggggatcgacttcacgatt
tcgccgctctccttttaccaggtcaacccgcaacaaaccgagcgcctctaccagaccgcc
attgaaaatgccggactagacggaagcaagaccgttatcgatgcttactgtgggattggg
acgatctctttagccgtggctaagcacgccaagcacgtttacggggtcgaaatcgtgccg
gccgccattgcagacgccaagcaaaacgccgccaataatgggatcgaaaatgcgaccttt
gttgttggcaaggccgaagagcagtttgccaagtggcaagccgagggtctcaaacctgat
gtggtgattgttgacccaccgcgcaagggcttggatgcccaattgattgaggccaccggt
aagatggcgccccaaaaggtgatttacgtctcctgcaacccggcgactttggtccgcgac
ttacaacgcttcgccgaacagggctaccacgtgaccaagccgatccaaccggtcgaccag
ttcccgcagacgacgcatgttgagtctgttacggtcctggaacgtacagaaaaactgccg
aatccatcttgtcatcgtattckgcattga
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