Limosilactobacillus fermentum CECT 5716: LC40_0948
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Entry
LC40_0948 CDS
T01958
Name
(GenBank) ATP-dependent DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
lfr
Limosilactobacillus fermentum CECT 5716
Pathway
lfr03420
Nucleotide excision repair
lfr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LC40_0948
03430 Mismatch repair
LC40_0948
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lfr03400
]
LC40_0948
Enzymes [BR:
lfr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LC40_0948
DNA repair and recombination proteins [BR:
lfr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LC40_0948
MMR (mismatch excision repair)
Other MMR factors
LC40_0948
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PcrA_UvrD_tudor
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
AAA_11
AAA_12
FWWh
ResIII
Motif
Other DBs
NCBI-ProteinID:
ADJ41519
LinkDB
All DBs
Position
complement(1683091..1685361)
Genome browser
AA seq
756 aa
AA seq
DB search
MQNQSMLEGMNDKQSEAVLTTEGPLLVMAGAGSGKTRVLTHRIAYLIEERHVLPWHILAI
TFTNKAAREMKERVAKLLGEAGNDVWVSTFHALCVRILRRDIEQLGYNRAFTIADTSEQR
TLIKRICEEQNIDTKKFEPRQLLSAISNAKNAMEDPATFSKNHQRPFDRMVARVYEAYQK
ELERNQTLDFDDLIMKTIELFKKAPETLTYYQDKFHYIHVDEYQDTNDAQYELVHMLAEK
YENICVVGDADQSIYGWRGANMNNILNFEHDYPNAHSVMLEQNYRSTQTILKAANEVIAN
NLERKDKNLWTENGAGEKISYYRAQNEHDEAQFIVKKIQEERAKHNYQYQDFAILYRTNA
QSRVIEETFLKSTVPYTMVGGHRFYDRMEIRDLLAYLTLIVNPLDSMSFERVVNTPKRGI
GMTSVERLREFAQESNLPLLAAAQNVQNANAISARTRNKIEEFGQLITALQDEAKVLSIT
DLTDQVLERTGYLAELQKDKTLQGQTRRENLEEFKSVTAEYDRQHEDDEGMDHLQKLTDF
LAGLALVSDQDDVDEAEPAVTLMTLHAAKGLEFPVIFLIGMEEGVFPLSRAMTDNKELEE
ERRLAYVGITRAKKKLYITNAFSRMLYGHIQRNRPSEFVEEITPELMQSENQNQGERSLS
GRISGGNSYAFKAATATTYQRPSDAGKRVAPKTNTGTGAEKKSWNTGDKVNHKKWGQGTV
VSVNGTGENMELDIAFPQQGVKRLLASFAPITKVED
NT seq
2271 nt
NT seq
+upstream
nt +downstream
nt
gtgcagaaccaatcgatgttagagggaatgaacgataagcaaagcgaggccgtgttgacg
acggaaggccccctactagtaatggcgggggctggttccggtaaaacccgggtcctgacc
caccggatcgcttacttgattgaggagcgtcacgtcttgccgtggcacatcctagcaatc
accttcactaacaaggccgcccgggaaatgaaggagcgggtcgctaagctcctaggtgag
gctggcaacgacgtctgggtgtcgaccttccacgccctgtgcgtacggattttacgtcgt
gacattgaacagctaggctacaaccgggcctttacgattgccgacaccagcgaacaacgg
acgctgattaagcggatctgcgaggaacaaaacatcgacaccaagaagtttgaaccccgg
caactgctgtcggcgatttcaaacgccaagaatgcgatggaggatccggccaccttttcc
aagaaccatcaacgcccctttgaccggatggtggcgcgcgtttacgaagcctaccaaaag
gaactggaacgcaaccagaccctggattttgacgacttgatcatgaagacgatcgagctc
ttcaaaaaggcgccggaaactttgacctactaccaagataagttccactacatccacgtt
gacgagtaccaggacaccaacgacgcccagtacgaattggtgcacatgctggccgaaaag
tacgaaaacatctgcgtggtgggggatgccgaccagtcaatttacggctggcggggggcc
aacatgaacaacatcttaaactttgagcatgactaccctaacgcccattccgtgatgttg
gaacaaaactaccgctcaacccaaacgatcttaaaggcggccaacgaagtgatcgccaac
aacttggaacgtaaggacaagaacctctggaccgaaaacggcgccggggaaaaaatctcc
tattaccgggcccaaaacgagcacgatgaagcgcagttcattgtcaaaaagatccaagaa
gaacgggccaagcacaactaccaataccaagacttcgccatcctttaccggaccaacgcc
cagtcgcgggtgattgaagaaactttcctaaagtcgacggttccttacacgatggttggt
ggccaccgcttctacgaccggatggaaatccgcgacctcttggcctacctgaccttgatt
gtcaacccgttggactcgatgtcctttgaacgggtggtcaacacccccaagcgcgggatt
gggatgacctccgtcgaacggttacgggagtttgctcaggagtccaacttgccactgctg
gcggcggcccaaaacgttcaaaacgccaacgccatctcggcacggacccgcaataagatc
gaagaatttggccagttaatcaccgccttacaagacgaggccaaggtgctttcgatcacc
gatttgaccgaccaggtgctggaacggaccggctacctagccgaattgcagaaggataaa
accctccaggggcaaacccggcgggaaaacctggaggaatttaagtcggtgaccgccgaa
tacgaccgccaacacgaagacgatgagggaatggaccacctacaaaagctaaccgacttc
ctggccggtttagccctggtgtccgaccaagacgacgtcgatgaagcggaacccgccgtt
actttgatgaccctccacgccgctaaggggttggaattcccggtcatcttcttgatcggg
atggaagaaggggtcttcccgttgtcccgggccatgaccgacaacaaggaattagaagaa
gaacggcgcttggcttacgtggggatcacccgggctaagaagaagctttacatcaccaac
gccttttcgcggatgctgtatggtcacatccaacgcaaccggccgtcggagtttgtcgag
gaaattacccccgaactgatgcaatcagagaaccaaaatcagggtgaacgctcgttaagc
ggtcggatatccgggggcaactcctacgcctttaaggccgccacggccaccacttaccag
cgcccttctgatgcggggaagcgggtcgccccgaagaccaacaccgggaccggggccgaa
aagaagtcttggaacaccggcgacaaggttaaccataagaagtgggggcaagggaccgtg
gtctccgttaacggaaccggagaaaacatggaactagacattgcctttccacagcagggg
gttaagcgcctcttagcaagctttgccccaatcaccaaggtggaggattaa
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