Limosilactobacillus fermentum CECT 5716: LC40_0961
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Entry
LC40_0961 CDS
T01958
Name
(GenBank) DNA-directed RNA polymerase subunit beta' (RNAP subunit beta') (Transcriptase subunit beta') (RNA polymerase subunit beta')
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lfr
Limosilactobacillus fermentum CECT 5716
Pathway
lfr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lfr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LC40_0961
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lfr03021
]
LC40_0961
03400 DNA repair and recombination proteins [BR:
lfr03400
]
LC40_0961
Enzymes [BR:
lfr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LC40_0961
Transcription machinery [BR:
lfr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LC40_0961
DNA repair and recombination proteins [BR:
lfr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LC40_0961
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
ADJ41532
LinkDB
All DBs
Position
complement(1715696..1719343)
Genome browser
AA seq
1215 aa
AA seq
DB search
MIDVNNFESMEIGLASPMKIRSWSYGEVTKPETINYRTLKPEKDGLFDERIFGPTKDFEC
ACGRYKRARYNKRVCERCGVEVTSAKVRRERMGHIELAAPASHIWYFKGIPSRMGLVLDM
SPRELEEVIYFASYVVLDAGDTGLEKKQLLSEPRYRELKEEYGNRFTAEMGAEAIQKLLA
DVDLAKEATELKAVLKEATGQKRTRAVRRLDILEAFLKSGNKPEWMVMDVIPVMPPDLRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLELNAPGIIVQNEKRMLQEAVDALIDNGR
RGRPVAGPGNRPLKSLSHLLKGKQGRFRQNLLGKRVDYSGRSVIDVGPSMKMNQMGLPVP
MAMELFKPFIIHELTKRNLATNVKAAKRMIDKRDEKVFDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPILVSGKAMRLHPLVCAAYNADFDGDQMAIHVPLSDEAQAEARLLMLAAHHIL
SPRDGEPIVAPSQDMVIGNYYMTTEDKAREGEGMIFKDTNEARMAYRNGYVALQTRVGVL
TSSFDKKPFTAEQRQKIMVTSVGKLLFNNIMPEDYTYINEPTADNLQNGVPDKYFLEPGE
DIHAYLENAPLVPPFKKGFLSDIIADVYKIYKVTVTSQLLDRIKDLGYYESTISGLTVGI
ADVTDLKEKPEIIEKAHKQVALVTKQFRRGLITDNERYERVIGIWNDAKDEVQNKLIEHM
DIHNPINMMSDSGARGNISNFTQLAGMRGLMASPSGKIMELPILSNFREGLSVLEMFISS
HGARKGMTDTALKTANSGYLTRRLVDVAQDVIVREKDCGTDRGLEVTAITNGNEMIEPLY
DRILGRYTMKSVFNPETGEKIVGKNVLLNEEMAQKIIDAGVQKVTIRSAFTCNTEHGVCE
RCYGRNAATGDQVEAGEAIGTVAAQSIGEPGTQLTLRNFHTGGVAGNDDITQGLPRIQEI
VESRNPKGKATISEVTGQVVSIEENPAEQTKDVTIKGETDTRTYTLPITARMRVAEGDDI
HRGRAINEGSIDPKEMIRVRDVLSTETYLLSEVQNVYRMQGIDLLDKHVEIMIRQMMRKV
RVMDPGDTDVLPGELLEISQFRDANYQTLISGGIPATARPVILGITKAALETNSFLSAAS
FQETTRVLTDAAIRGKNDPLVGLKENVIIGKIIPAGTGMGAYRNIKPKEVSVNTGATDGA
ITSIREMEEQLKDQD
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
ttgattgacgtcaataattttgaaagtatggagatcggtctggcttccccaatgaagatc
cggagttggtcttacggtgaggttaccaagccggaaacgatcaactaccgaactttaaag
ccagaaaaagacggtctctttgatgaacgaatcttcggcccgaccaaggactttgaatgt
gcctgtggtcgctacaagcgggcgcgttacaacaagcgggtctgtgagcgttgtggggtt
gaagtaacctctgccaaggtccgccgggaacggatgggtcacattgaactggctgctcct
gcttctcacatctggtacttcaaggggattccgagccggatggggctggtcttggacatg
agcccacgggaactggaagaagtaatctactttgcttcttacgtcgttttagacgccggg
gacacgggactggaaaagaagcaattgctttccgaaccacgttaccgggaactcaaggaa
gaatatggcaaccgtttcaccgctgagatgggggccgaggcgatccaaaagctactggcc
gacgtagacctggccaaggaagcaaccgaattaaaggcggtcttaaaggaagcaactggg
caaaagcggacccgcgcggttcggcgcctggatatcttggaagcctttctcaagtctggg
aacaagcctgaatggatggtgatggacgtaattccggttatgccacctgacttacggccg
atggttcaactggaaggtggccgctttgccacttccgacttgaacgacttgtaccggcgg
gtcattaaccggaacaaccggttgaagcgcctgttagaattaaacgctccgggcatcatc
gttcaaaacgaaaagcggatgctccaagaagccgttgacgccctgattgataacggtcgc
cgtggccgtccggttgccggtcctggtaaccgtccgctcaagtccttgtcccacttactt
aaggggaagcaaggacggttccgtcaaaacctgctcgggaagcgggtcgactactctggt
cgttccgttatcgatgttggtccatccatgaagatgaaccaaatggggttgccggttcca
atggcgatggaactcttcaagccatttatcattcacgaactgaccaagcggaacctggct
accaacgttaaggcagccaagcggatgatcgacaagcgtgacgaaaaggtcttcgatgtc
ttagaagacgtgatcaaggaacaccctgttctcttgaaccgcgcccctaccctgcaccgg
ttagggatccaagccttcgaaccaatcctggtttccgggaaggccatgcgtttgcaccca
ctggtttgtgccgcttacaacgccgacttcgacggggaccagatggccatccacgtacca
ctgtccgatgaagcccaggccgaagcgcgtctgttaatgttagccgctcaccacatcctt
tcacctcgtgacggggaaccaatcgtggccccatcccaggatatggttatcggtaactac
tacatgacgactgaagacaaggcccgtgaaggggaaggtatgatctttaaggacaccaac
gaagcccggatggcctaccgtaacggttacgtggccttacaaacccgggttggggtgctg
acttcttcctttgacaagaagccgttcaccgctgaacaacgccaaaagatcatggtgacc
tcggttgggaagttgctcttcaacaacatcatgcctgaagattacacttacattaacgaa
ccgaccgccgacaacctgcaaaacggggttccggacaagtacttcttggaacctggtgaa
gacattcacgcctacttagaaaacgcgccgctggtgccgccgtttaagaagggcttcttg
tcggacatcattgccgatgtttacaagatctacaaggtgaccgtcacctcccaacttctt
gaccggatcaaggaccttggttactacgaatccacgatttccgggttaaccgtcgggatc
gccgacgtgaccgacttaaaggaaaagccggaaatcatcgaaaaggcgcacaagcaagtg
gccctggttacgaagcaattccgccgtggtttgatcaccgataacgaacgttacgaacgg
gtcattgggatctggaacgatgccaaggatgaagttcaaaacaagctgatcgaacacatg
gatatccacaacccaatcaacatgatgtccgactctggggcccgggggaacatctccaac
tttacccagctggccggaatgcgtgggttaatggcttccccatccgggaagatcatggaa
ctgccgatcctttctaacttccgggaaggcctttccgtcttggaaatgtttatctcttcc
cacggggcacggaaggggatgaccgacacggccttgaagactgccaactctggttacttg
acccggcggctggttgacgtggcccaagatgtgatcgttcgcgaaaaggactgtggcacc
gaccgtggtctggaagtgaccgccatcactaacgggaacgaaatgatcgaaccgttatac
gaccggattttgggtcgttacacgatgaagtccgtctttaatccggaaaccggggaaaag
atcgtcggtaaaaacgtcctcttgaacgaagagatggcgcaaaagattatcgatgcgggc
gttcaaaaggtaacgattcgctccgccttcacttgcaacaccgaacacggggtttgtgaa
cgttgttacggacgcaacgccgctaccggggaccaagtggaagccggggaagcaatcggg
acggtggccgcacagtcaatcggtgaaccagggacccagctgacgctgcggaacttccac
accggtggggtggccggtaacgacgacatcacccaagggcttccgcgtatccaagaaatt
gtggaatcacggaacccgaaagggaaggccacgatctccgaagttactggtcaggtggtt
tccatcgaagaaaacccagctgaacaaactaaggacgttacgatcaagggtgaaaccgac
acgcggacttacaccctgccgatcacggcccggatgcgggtggccgaaggtgatgatatt
caccgtggtcgtgccatcaacgaagggtcaattgatccaaaggaaatgattcgggttcgc
gacgtcttgtccacggaaacctacctgctctccgaagtgcaaaatgtttaccgtatgcag
gggattgacctgctcgacaagcacgttgaaatcatgattcgccaaatgatgcgtaaggtg
cgggtgatggatcctggtgatactgatgttttaccgggtgaactgttggaaatcagccaa
ttccgcgatgctaactaccaaaccttgatttccgggggaattccggccactgcccggcca
gttatcctcgggatcactaaggcggcccttgaaactaacagtttcctttcggccgcttcc
ttccaagaaacgacgcgtgtccttaccgacgccgccatccggggcaagaacgacccgctg
gtggggctcaaggaaaacgttattatcgggaagatcattccagccggaacggggatgggt
gcttaccgcaacatcaagcccaaggaagtcagtgtcaacactggcgcaaccgatggggcc
attacctccatccgcgaaatggaagaacaactaaaggatcaagactaa
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