Limosilactobacillus fermentum CECT 5716: LC40_0978
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Entry
LC40_0978 CDS
T01958
Name
(GenBank) Beta-lactamase domain-containing protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lfr
Limosilactobacillus fermentum CECT 5716
Pathway
lfr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lfr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LC40_0978
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lfr03019
]
LC40_0978
Messenger RNA biogenesis [BR:
lfr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LC40_0978
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
RMMBL
EF_assoc_2
Motif
Other DBs
NCBI-ProteinID:
ADJ41544
LinkDB
All DBs
Position
complement(1748104..1749936)
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AA seq
610 aa
AA seq
DB search
MRKLQIKNNEVAFFAVGGLGEIGKNMYCVQFQDEIVIIDCGVLFPEDELLGVNYVIQNYD
YLVENKEKIKGIFITHGHEDHIGGLPFFLQKVNVPIYAGPFATSLIKGKLDEKHLLRSTE
LHEIDEFSEVHFKKLWVSFFRTTHSIPDTVGVAVHTPQGTIIQTGDFKFDLTPVGNLPAP
NFQQMAKLGEEGVLLLTSDSTNAERPEFTKSERWVDIHIRRVFERIKGRIIFASFASNVY
RLREASDAAMRQGRKIAIFGRSMENAIAAGQALGYLKIPEDSLIDPNELNSYPPEKVMIM
CTGSQGEPMAALSRIANGTHRQITIQPEDTVVFSSNPIPGNTTSVNALINKLEESGATVI
HGYVNNIHTSGHGGQIDEELMLRLMKPKFFAPVHGEYRMQKIHTKLAQLTGVPKENTFIL
ENGDVLALTKDTCRLADHIESMGDVYIDGRDVSDSVGDPEIRERRMLSEEGVVTAVAVVD
LKDYQIVAGPDIVSRGFVYMHESQELIKAANHEVFWAILNTFKNHKRVDRRAINRMIVLR
LQRLLYDRTGRRPVIIPMVTILNADAQERAPKKNQAEDGKEGSGATRRNNRKCRPNAKKT
AAKETATVTE
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgcgtaagttacaaattaagaataatgaagtggccttctttgctgtcgggggcctgggg
gaaattgggaagaacatgtactgtgttcagttccaagatgaaattgtgatcattgactgt
ggggtactcttcccagaagacgaactacttggggtcaattacgtcattcaaaattacgat
tacctagttgaaaataaggaaaagattaaagggattttcattacccacggtcacgaagac
cacattggaggcttgcccttcttcttgcaaaaggttaacgtgccgatctatgccggtccg
tttgccacctcgttgattaaggggaagttagacgaaaagcacctcttgcggagcacggaa
ctgcacgagattgatgaattctccgaggttcactttaagaagctgtgggtttccttcttc
cggactacccactcgattccggatacggtgggggtagcggttcacaccccgcaagggacg
atcattcaaaccggggacttcaagtttgatttaaccccggttggcaacttgccggcgccc
aacttccaacaaatggccaagctgggtgaagaaggggtgctcttgttgacctcggactcc
accaacgccgaacggccggagttcactaagtccgaacgctgggttgacatccatattcgg
cgggtcttcgaacgaattaaggggcggatcatctttgcctcctttgcctccaacgtttac
cggttgcgggaagcctctgacgccgccatgcgccagggccgcaagatcgccatttttggt
cggtcaatggaaaacgccattgcggcgggtcaggcactgggttacctaaagatcccggaa
gactccttgatcgaccccaacgagttaaactcctacccaccggaaaaggtcatgatcatg
tgtactggttcgcagggggaaccgatggccgccctgtcacggatcgctaacgggacccac
cgtcagatcacgatccaacctgaagatacggtggtcttctcctccaacccaattccgggg
aacacgacttcggtcaacgccctgattaacaagttggaagaaagcggcgctaccgttatc
catggttacgttaacaacatccacacgtccgggcacgggggccaaattgacgaagaacta
atgctgcgcttgatgaagccgaagttcttcgccccggtccacggtgaataccggatgcaa
aagatccacactaagctggcccaattgaccggggtgccaaaggaaaacaccttcatcctg
gaaaacggggacgttctggccttgaccaaggacacctgtcgcttagccgaccacatcgaa
tcgatgggggacgtttacattgacggacgcgacgtcagcgattcagttggtgatccggaa
attcgcgaacggcggatgctctccgaagaaggggttgtaacggcagtggccgtggtcgac
ttaaaggactaccagatcgtggcggggccagatattgtttcccggggctttgtttacatg
cacgaatcccaggaactgatcaaggcggccaatcacgaagtcttctgggcgatcctaaac
accttcaagaaccacaagcgggttgatcgccgggccattaaccggatgatcgtcttacgt
ttgcaacggctcttgtacgaccggaccggccggcgcccagtcattattccgatggtgacg
atcctaaacgccgatgctcaggaacgggcaccaaagaaaaaccaagccgaagatggtaag
gaaggatccggggcaacccggcgtaacaaccgtaagtgtcgtccgaacgccaagaaaacg
gctgcgaaggaaacggctacggtcaccgaatag
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