Limosilactobacillus fermentum CECT 5716: LC40_1046
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Entry
LC40_1046 CDS
T01958
Name
(GenBank) DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
lfr
Limosilactobacillus fermentum CECT 5716
Pathway
lfr03420
Nucleotide excision repair
lfr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LC40_1046
03430 Mismatch repair
LC40_1046
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lfr03400
]
LC40_1046
Enzymes [BR:
lfr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LC40_1046
DNA repair and recombination proteins [BR:
lfr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LC40_1046
MMR (mismatch excision repair)
Other MMR factors
LC40_1046
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C_2
UvrD_C
AAA_19
Viral_helicase1
AAA_30
SLFN-g3_helicase
DEAD
AAA_16
Catalase_C
DUF4351
NACHT
Clenterotox
NB-ARC
Motif
Other DBs
NCBI-ProteinID:
ADJ41610
LinkDB
All DBs
Position
complement(1876062..1877792)
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AA seq
576 aa
AA seq
DB search
MLLAALNNHSSTKMKSIVTTIQRTQNRIIRNTDADLLFVQGAAGSGKTAAVLQRVAWLLY
RYRGNLNSSQVILFSPNQLFNDYIDQVLPELGEHNMVQLTYYQYVNRRVPRLQVASIQER
FDADQEGVNARASQLLTSLTYFNAVTRYAKRLGRDGHLRFKNLMFNKKAFFSKDKIAELY
YSFNQNYNLGNRLDATKQELLKMLNRRISGEMRSKWVEERIQTLSKEELDVIYHEYGGEF
KDEEAENKYLARRIVMEAFKPIKKAIDHNRWMNINAQYIHLLRVTPKLVKLADFGLTEDE
WAGYVDDQLAALKEKRMSANGISVYLYLYDLLTGKRGQREIRFVFVDEVQDYDAFQLAYL
KFCFPKARFTLLGDLNQAIFTHNNARSLLQQLGTMFEPEKTKVIQLTRSYRSTKQITNFT
KAILKDGEAIEAFEREGELPRVLTAPSEEDAVNQVVATLAKYQADHDTTAIITKTLTDAE
KITALLKEAGQAVTLIQTENQRLAQGTIVVPSYLAKGLEFDAVIVWDANQAKYQGDAERQ
LVYTICSRAMHALTVTSVGPVTDLIGQIPGGLYQTK
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atgctcttggcggccttaaacaaccactcgtcgaccaagatgaagagcatcgtcaccacc
atccagcggacccaaaaccggatcattcgtaacaccgacgccgacctgttattcgtgcag
ggggcggctgggagygggaagacggcggccgtcttgcagcgggtcgcttggctcttgtac
cgctaccggggcaacctcaattcctcgcaggtaatcttgtttagccccaaccagctcttt
aacgactacatcgaccaggtgctcccggaactgggggaacacaacatggtgcagctgacc
tactaccagtacgttaaccgtcgggtgccgcgcttacaagtcgcctcaatccaggaacgc
ttcgacgccgaccaggagggggtcaacgcccgggccagccaactgttaaccagcctgacc
tactttaacgccgttactcgctacgccaagcggttaggccgcgatggccacctgcgcttt
aagaacttgatgtttaacaagaaggccttctttagcaaggacaagatcgccgagctctac
tactcctttaaccaaaactacaacctggggaaccggctggacgctaccaagcaggagctg
cttaagatgctcaaccggcgcatttctggtgagatgcgctccaagtgggtcgaagaacgg
atccagaccctaagcaaggaagagctcgacgtcatttaccacgagtacggtggcgagttt
aaggatgaagaggccgaaaacaaatacctggcccgccggatcgtaatggaggccttcaag
ccgattaaaaaggcgatcgaccataaccgctggatgaacatcaacgcccaatacatccac
ctactccgggtgactccgaagctagtgaagttagccgactttggcctgaccgaagatgaa
tgggcgggctacgttgacgaccagttagcggccctcaaggaaaagcggatgagcgccaac
ggaatcagcgtctacctgtacttatacgatctcttgaccggtaagcggggccaacgcgag
atccgcttcgtctttgtcgacgaggtccaagattacgacgccttccagctggcctacctc
aagttctgcttccccaaggcccgcttcaccctgctaggtgacttaaaccaagccattttc
acccacaacaacgcccggagcctcttgcaacagttgggcacgatgtttgaaccggaaaag
accaaggtcattcagctgacccgttcctaccggtcgaccaagcagatcaccaactttact
aaggcgatcctaaaggacggggaagctattgaggcctttgaacgggaaggggaactgccg
cgggtgctgacggcgccaagtgaagaggacgccgttaaccaagttgtggcaaccttagcg
aagtaccaagccgatcacgacaccaccgccatcatcaccaagacgctgaccgacgccgaa
aagatcaccgcccttctaaaggaggccgggcaagcggtcaccctgattcagaccgaaaat
caacggctggcccaggggacgatcgtggtaccgtcatacttagccaagggactggagttt
gacgccgtgatcgtttgggatgccaaccaggctaagtaccaaggcgacgcggaacgccag
ttggtctacacgatttgttcacgggcgatgcacgccctgaccgtgaccagtgtgggcccg
gttacggacctgattggccagattccggggggattgtaccaaacgaagtga
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