Limnospira fusiformis: HFV01_02915
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Entry
HFV01_02915 CDS
T06534
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
lfs
Limnospira fusiformis
Pathway
lfs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lfs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HFV01_02915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lfs03019
]
HFV01_02915
03016 Transfer RNA biogenesis [BR:
lfs03016
]
HFV01_02915
Enzymes [BR:
lfs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
HFV01_02915
Messenger RNA biogenesis [BR:
lfs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HFV01_02915
Transfer RNA biogenesis [BR:
lfs03016
]
Prokaryotic type
tRNA degradation factors
HFV01_02915
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH-I_KHDC4-BBP
KH_2
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
QJB24947
LinkDB
All DBs
Position
complement(581745..583907)
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AA seq
720 aa
AA seq
DB search
MQEIDKSISFDGRDIRLKIGLLAPQAGGALLVESGDTSVLVTATRAEGRPGIDFLPLLVD
YEERLYAGGRIPGGFLRREGRPPDRVTLTSRLIDRPLRPLIPGWIRDDIQIVATTLSMDE
QVPPDVLAVTGASVAVLLARIPFYGPMAAVRVGLVGDDFIINPTYKEIRNGDLDLVVAGS
PQGVVMVEAGANELPEHDVIEAIDFGYEAVMDLIKAQTEIMQELGIENPIEEPPPEDPTL
IEFIQERVTEPVKKVLGQFELTKDERDAALDVIKEEQIVSAIALMPEDDPISLFNTENPK
AVGMIFKDITKKLMRQQILSEGVRVDGRNLDQVRPVSCRVGLLPKRVHGSGLFNRGLTQV
LSIATLGTPGDAQDLDDLHPQDEKRYMHHYNFPPYSVGETRPMRSPGRREIGHGALAERA
LLPVLPSKEQFPYVIRIVSEVLSSNGSTSMGSVCGSTLALMDAGVPIVKPVSGAAMGLIK
EGSEVRILTDIQGIEDFLGDMDFKVAGTDSGITALQMDMKITGLSLDVVADAIAKAKPAR
LHILEKMLEVLPKPRPDLSPFAPRLLTLKIDPDLIGLVIGPGGKTIKGITEETGVKIDID
DDGTVTIASTDSENAARAYQIVQGMTRKLNAGDVYVGKVTRIIPIGAFVEVLPGKEGMIH
ISQLAEYRVPKVEDEVAVGDEVIVKVREIDPKGRINLTRLKIHPDEAAAAKAAASSGTVQ
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgcaagaaattgataagtcgatatcctttgatggacgggatattagactcaagattgga
ttactagcgccgcaggcggggggagccctgttagtagaatcaggagatacatcagttctg
gtaacagcaactcgtgcagaaggaagaccgggaattgatttcctgcccctattagtagat
tatgaggaaagactttatgctggtggtcgtatccccggcggatttctacggagagagggt
cgccccccagatcgcgttactctcaccagtcgcttgattgaccgccccctacgtcctctc
attcccggttggattagagatgatattcaaatagttgccactactttgtctatggatgag
caagtaccaccggatgttctggcggtaacaggtgcttctgtggctgtgttgttggcgcga
attcctttttatggacctatggcggcggtgcgtgtgggattagtgggagatgatttcatt
attaatcctacctacaaggaaattagaaacggtgacctcgatttggtggtggctgggtcg
ccccaaggtgtggtcatggtggaggcgggggctaatgaattgccagaacatgatgtgatt
gaggcgatcgatttcggttatgaggcggtcatggatttgattaaagcccaaactgaaatt
atgcaggaattggggattgagaacccgatcgaagaaccgccaccagaagatccgactttg
atagaatttatccaagaacgggttacagaaccagttaaaaaggttctgggtcagtttgag
ttgaccaaagatgaacgggatgctgctcttgatgtgatcaaagaagagcaaattgtcagt
gcgatcgcactaatgccagaagatgaccccattagcttgttcaataccgaaaatcctaaa
gcggtggggatgatctttaaagacatcaccaaaaaactcatgcgacagcaaatcctctcc
gagggagtgcgggttgatggtcgcaatttagaccaggtgcgtccggtgtcctgtcgggtg
ggattattaccaaaacgagtccatggtagtggtttatttaatcgcggtctaactcaggtc
ctctctattgctactctggggacccccggagatgctcaagatcttgatgacctccacccc
caagatgaaaaacgctatatgcaccactacaatttccctccctattctgtgggggaaaca
agacctatgcgatcgccaggacgtagagaaattggtcacggtgctttggcggaaagggct
ttattgcctgtgctaccatcaaaagagcagttcccctatgtgattcggattgtctctgag
gtgctatcctctaatgggtctacttctatggggtccgtttgtgggtccactctggctttg
atggatgctggggttcccattgtcaagcctgtgagtggcgcggcgatgggtttgattaaa
gaagggtcggaagttcgtatcctcacagatattcaagggattgaagactttttgggagat
atggattttaaagtcgcaggtaccgatagtggtatcaccgccctacaaatggacatgaag
attactggcttgtccttggatgtagtcgcagatgcgatcgccaaagctaaacccgcgcgg
ctgcatattctcgagaaaatgctggaagtcctacccaaacctcgtcctgacctatctccc
ttcgcacctcgcctgctgacattgaaaattgatccagacttaatcggtctggtcattggt
ccgggaggtaaaaccattaaaggaattaccgaagaaacaggcgttaaaattgacatcgac
gatgatggcactgttaccattgcctctacagacagcgaaaacgccgcccgcgcttaccaa
attgttcagggtatgacccgcaagctaaacgccggagatgtctatgtagggaaagttacc
aggattattcctattggtgcttttgtggaagttctacctggaaaggaaggcatgattcac
atttctcaattagcagaataccgagtccccaaagttgaggatgaggtggctgttggagat
gaggtcatcgtgaaagtccgcgaaattgaccccaaaggtcggattaacttaacccgccta
aaaatacaccccgacgaagccgccgccgccaaggctgctgctagtagtggcactgtgcaa
tag
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