Limnospira fusiformis: HFV01_06400
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Entry
HFV01_06400 CDS
T06534
Symbol
xth
Name
(GenBank) exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
lfs
Limnospira fusiformis
Pathway
lfs03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lfs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HFV01_06400 (xth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lfs03400
]
HFV01_06400 (xth)
Enzymes [BR:
lfs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
HFV01_06400 (xth)
DNA repair and recombination proteins [BR:
lfs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
HFV01_06400 (xth)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_2
Motif
Other DBs
NCBI-ProteinID:
QJB25481
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Position
complement(1278860..1279651)
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AA seq
263 aa
AA seq
DB search
MKIATWNVNSIRTRQDQVLSWLQGQDIDVLCLQETKVIDQDFPRSPFEELGYHVYIYGQK
AYNGVAIFSRLNIESVIMGFTPILGADQVGELDDQKRVIAGVIDDICIVNVYIPNGSSVG
SDKYEYKLQWLNRLGDYLQQMLIKYPHLCICGDFNIAPEDRDIYNPQNRENHIMASAAER
QALDAIANLGLADGFRKFTQDGGHFTWWDYRAASFTRNRGWRIDHHYLSPGLYQNAIACY
IDTEPRTQPKPSDHAPVILEIGT
NT seq
792 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattgctacctggaatgtgaattcaattcggactagacaagaccaagttttgagc
tggttacaaggtcaggatattgatgttttgtgcctacaggaaactaaggttattgatcaa
gattttccgcgatcgccttttgaagaattgggctatcatgtctatatttatggtcaaaaa
gcctataatggggtggcaatttttagtcgcctaaatatcgagtctgtaattatgggattt
actccgattttgggtgctgaccaggtgggggaattggacgaccaaaaacgggtaattgct
ggggtgattgatgatatctgtattgtcaatgtttatatcccgaatgggtcgagtgtggga
agtgataaatatgagtataagttacagtggttaaaccgattaggggattatctacaacag
atgttaatcaaatatcctcatctgtgtatttgtggtgattttaatattgcgccagaagat
cgggatatttataatcctcaaaaccgggaaaatcatattatggcatcggcggcggaacgt
caagccttagatgcgatcgctaatttgggtttagcagacggctttcgtaagtttacccaa
gacggcggacattttacctggtgggactaccgcgccgcctcatttacccgcaaccgaggc
tggagaattgatcaccattatctaagtcctggactctatcaaaatgcgatcgcttgttac
attgacactgaacccagaacccaaccaaaaccgagtgatcatgcacccgttattttagaa
atcggaacttag
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