Limnospira fusiformis: HFV01_08085
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Entry
HFV01_08085 CDS
T06534
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lfs
Limnospira fusiformis
Pathway
lfs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lfs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HFV01_08085 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lfs03019
]
HFV01_08085 (recQ)
03400 DNA repair and recombination proteins [BR:
lfs03400
]
HFV01_08085 (recQ)
Enzymes [BR:
lfs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HFV01_08085 (recQ)
Messenger RNA biogenesis [BR:
lfs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HFV01_08085 (recQ)
DNA repair and recombination proteins [BR:
lfs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HFV01_08085 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HTH_40
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
QJB25755
LinkDB
All DBs
Position
1656174..1658393
Genome browser
AA seq
739 aa
AA seq
DB search
MSSFPPPLAQPQSLQQCLKQYFGYDSFRPGQQEIIEQVLQKRDVLAIMPTGGGKSLCFQL
PALLKPGLTLVVSPLIALMQDQVEALKDNGIGATFLNSTVDIHEARQRESAILQGQIKLL
YVAPERLLSPQFLDFLDRLEAAFGISTLVIDEAHCVSDWGHDFRPEYRQIQQVRSRYPHV
PAIALTATATERVRFDIIKQIVLKQPYVHVASFYRSNLYYQVIPKQPKKRFPQLLKVIES
MSGSGIIYCSSRKRVEEVALKLQHNNIPALPYHAGMADSDRLESHTRFIRDDVRIIVATI
AFGMGIDKPDVRFVIHYDLPKSLENYYQESGRAGRDGQPAQCLLLFSYGDMKTIEYLIEQ
KPDVDEQRIARQQLRQVIDYAESTECRHRIQLRYFGEEFPGNCGTCDNCCHQRPMEDWTV
EAMKFLSCVARCRERFGMSYIIDVLRGAKNQRVLSRGHDKLSTYNIGRDRTVDEWKMLAR
SLLHQGLLDQTNDGYSILKLNNLSWEVMKRQREVKIAVVRDRQLPQQTWSMAADVKMLLE
HLRQVRKQLADQNDIAPYKIFSDSTLGLMARERPQTKQDLLRLSGVTAYKVQHYGQQFLN
AIHQYCLEQGIPLKPTKPPLPAVSSSSISKWYHVSPTVLQTWELFKQGLNVEEIAYQRGL
KSTTIYGHLADLIANNYGDIDINTLVSPERQQVILEAIAILGDEHLTTIYEHLGKAYSYG
EIQLVRALWRSQNSPDIEF
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagttttccgccacctctagcgcaacctcaatccctccaacaatgccttaaacag
tattttggctatgacagctttagaccaggacaacaggagattatagaacaagtgctgcaa
aagcgggatgtactcgcgattatgcctacagggggtggaaaatccctgtgctttcaactt
cccgctctcttgaaacccggtctgacattggtggtttcgcctttaatcgctttaatgcaa
gaccaggtagaagcgctaaaagataatggtattggggcgacatttctgaatagtacggta
gatattcacgaagcgcgtcagcgagagtcagctattctacaaggtcaaattaagctgctt
tatgtagcaccggaaaggttactatctcctcagtttttagattttttagaccgccttgag
gcggcatttggcatatcaactctggtaattgatgaagctcattgtgtctcagattggggt
cacgattttcgaccagaatatcgacaaattcaacaggtgcgatcgcgttatccccacgtc
ccagcgatcgctctcacggctacggctacggaacgggtcagatttgatataattaaacaa
attgtcctcaaacaaccttatgttcacgtcgccagtttctaccgttctaatctctactat
caggtaatccctaaacaaccgaaaaaacggttccctcaactattaaaagtaattgaatcg
atgtcaggttcaggaattatttactgttccagtcggaaaagggtggaagaagtcgcatta
aaattacaacataataatatcccagccctcccctatcatgcgggaatggcggatagcgat
cgcctagaaagtcatacccgttttatccgagatgatgtccgaattatcgtggctactatc
gccttcggtatgggtatagataagccagatgtccggttcgttatacactacgatttaccg
aaaagtttggaaaactattaccaagagtcaggacgtgctggacgggatggacaaccggct
caatgtctgctattgtttagttatggggatatgaaaaccattgaatatttgattgagcaa
aagcctgatgttgatgaacaaagaattgcgcgccaacagttgcgacaggtaattgattat
gctgagtctaccgagtgtcggcaccgcattcaactgcgctattttggagaggaatttccc
ggtaattgtggcacctgtgataattgttgccatcaacgacctatggaagattggacagtg
gaagcaatgaagtttctatcctgtgtggcgcggtgtcgggaaaggtttgggatgagttat
attattgatgtgttgcggggtgctaaaaatcaaagggttttgagtaggggacatgataaa
ctttccacctataatataggacgagaccggactgttgatgagtggaaaatgttggcgcga
tcgcttttgcatcaaggactgttagaccagactaatgatggctattctattttgaagtta
aataacctcagttgggaggtgatgaaaagacagcgggaagtcaaaattgcggtggtacgc
gatcgccaacttccacaacaaacttggtctatggcggcggatgttaaaatgttattagag
catctccgtcaagttcgtaaacaactggctgaccaaaatgatattgctccctataagatt
ttttccgattcgactttggggttaatggcgcgagaacgtccccaaactaaacaggatctg
ttgagactttctggggtgactgcttataaggttcaacattatggtcagcagttcttaaat
gctatccatcaatattgtctggaacaaggtattcccctcaagcctactaaaccgccatta
cctgctgtttcatcatcatctatctctaagtggtatcatgtctcccctactgttctgcaa
acctgggagttatttaagcagggtttaaatgtggaagagatcgcttatcagagaggctta
aaatctactacgatttatggtcatttggcggatttaattgctaacaattatggcgatatc
gatattaatacattggtatctcctgaacgacaacaggtgattttagaagcgatcgctatt
ttgggagatgaacacctaacaacaatttatgaacatctaggaaaagcctacagttatggg
gaaattcaattagttagggctttatggcgatcgcaaaattcccccgatattgagttttga
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