Limnospira fusiformis: HFV01_13090
Help
Entry
HFV01_13090 CDS
T06534
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
lfs
Limnospira fusiformis
Pathway
lfs03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lfs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HFV01_13090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lfs03400
]
HFV01_13090
Enzymes [BR:
lfs01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
HFV01_13090
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
HFV01_13090
DNA repair and recombination proteins [BR:
lfs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
HFV01_13090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
QJB26569
LinkDB
All DBs
Position
2682759..2683673
Genome browser
AA seq
304 aa
AA seq
DB search
MPELPEVETVRKGLNQMTLNQPIVGADVLLDSAIAHPTAVEFIAQLTNTTINHWYRRGKY
LLAQLQAPSQPSNPIFTSKDPIETKTSDGGWLGVHLRMTGQLLWLTSDQPLHKHTRVRLF
LQGERELRFVDQRTFGKIWWVPPGMAVMDVISGLRELGPEPLSDEFSPEYLANKLRLRQR
PIKTALLDQAILAGLGNIYADEALFLAGIQPTTPSRRLSEDQVNRLCTHIVEVLQEAIAS
GGTTIRNFLNVQGVNGNYGSHAWVYQRGGKPCRVCQTPIAKIKLSGRGTHFCPRCQPSLD
SDLS
NT seq
915 nt
NT seq
+upstream
nt +downstream
nt
gtgccagagttacctgaagttgaaaccgttagaaagggtctaaatcagatgaccctcaat
cagcctatagtgggtgcggatgtcctgttagatagtgcgatcgctcaccccactgctgtg
gaatttatcgcccaacttaccaacactaccatcaaccattggtataggcggggaaaatat
ctgttagcgcaactacaagcgccatcacagccatcaaatcctattttcacatcaaaagac
ccaatcgagactaagacaagcgacgggggctggctgggtgtgcatttgcggatgaccgga
caacttttgtggctgacttctgatcaacctttacataaacataccagggtgagattgttt
ttgcagggggaacgagaattgagatttgttgaccagcggacttttggtaaaatctggtgg
gttccccctggtatggcggtgatggatgtgatttctggtttacgggaattgggaccagaa
ccccttagcgatgaattttcccctgagtatttagccaacaaactgcgactccgccaaaga
ccgattaaaacggctttactagaccaagctatattggctggtttgggtaatatttacgcg
gacgaggcattatttttagcgggaattcaacccacaactcctagccgtcgtctcagtgaa
gaccaagttaatcgcctgtgtacccacattgtcgaggttttgcaagaggcgatcgcttcc
ggtggcacaactattcgtaatttcctcaacgtccaaggcgttaacgggaactacggtagc
cacgcctgggtttatcaacgcggcgggaaaccttgtcgagtttgtcaaacccccatcgct
aaaattaaactatcgggacgcggcacccatttctgccctaggtgtcaaccttcactcgat
tctgatctctcctga
DBGET
integrated database retrieval system
