Limnospira fusiformis: HFV01_19495
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Entry
HFV01_19495 CDS
T06534
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
lfs
Limnospira fusiformis
Pathway
lfs03030
DNA replication
lfs03430
Mismatch repair
lfs03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lfs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HFV01_19495
03430 Mismatch repair
HFV01_19495
03440 Homologous recombination
HFV01_19495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lfs03032
]
HFV01_19495
03400 DNA repair and recombination proteins [BR:
lfs03400
]
HFV01_19495
Enzymes [BR:
lfs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HFV01_19495
DNA replication proteins [BR:
lfs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HFV01_19495
DNA repair and recombination proteins [BR:
lfs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HFV01_19495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
tRNA_anti_2
HROB
Motif
Other DBs
NCBI-ProteinID:
QJB27578
LinkDB
All DBs
Position
complement(4038748..4042407)
Genome browser
AA seq
1219 aa
AA seq
DB search
MSFVGLHIHSDYSLLDGASQLPQLVSRAVELGMPAIALTDHGVMYGAIELIKICRSKGIK
PIIGNEMYVLNADVTVQQRGIKKYHQVVLAKNTQGYKNLVKLTTISHLKGFQGKGIFARP
CINKELLEEYHEGLIVTSACLGGEVPQAILQRRMDMARQTVEWYKRVFGDDYYLEIQDHG
SPEDRIVNVALVQLAREFEVKIVATNDSHFISCNDVEAHDALLCINTQKLITEDNRLRYS
GTEYLKSAEEMMQLFRDHLPDEVIKEAIANTLEVAEKVEPYTGILGEPRIPDYPIPPNHT
ADTYLEEIAWEGLKKRLNAQGRSEIKPVYRERLEYELKMMQKMGFATYFLVVWDYIKHAR
DNHIPVGPGRGSAAGSLVAYALQITNIDPVHHGLLFERFLNPERKSMPDIDTDFCIDRRD
EMIKYVTSKYGEEKVAQIITFNRMTSKAVLKDVARVLGIPYSKSDQMAKMIPVSRGKPTK
LKVMISDQSPSPEFKQAYDNDFVPIKNDAGEEVGTIAVRQWVDMAIRIEGTNKTFGVHAA
GVVISKQPLDEIVPLQRNNDGSVITQYFMEDIEALGLLKMDFLGLKNLTIIQRTLNYISQ
NHHLDIDPYNLAADERKAMDILAKGAVKKMPEDVAKTYKILERGDLEGLFQLESSGMRQI
VKDLKPSSIEDISSILALYRPGPLDAGLIPQFINRKHKREPIRYEHKLLEPILNETYGIL
VYQEQIMKMAQDLAGYSLGQADLLRRAMGKKKASEMQKHRETFIDGATRNGVPQNIAEHL
FDQMVKFAEYCFNKSHSTAYGYITYQTAYLKANYPTEYMAALLTENSGNTDKVRAYIESC
KHLGIDVVPPDINRSNVDFTPIENRIVFGLSAIKNVGDGAIEHLLSVREEGGPFRSLADL
CDRINLQMVNSRALESLIKSGAFDSLHANRKQSIEYLNIVIPWAQDRAKNREIGQTNLFD
LVNYATTESNSPSGEPAFPKGDDYAPKDKLQFEKELLGFYVSDHPLKSLLDSGILPDNVT
LDKLPEQKSKAAVKVAVILINIKPHLTKKGDRMAFLLLEDLTGQIDAVVFPSSYEAVQQE
LKENAVVVVEGKVEKRDDQTQIIVDAIKSADELIKPNNQPGSPSQLPPNLAASSVIQLCL
TPEEICQLERLQILKGILEEYRSNQGLGRVPIQAIVDGQVSPKPLVRFGSQFWVENQEAI
VQQLKTSGFTVDILSIDNE
NT seq
3660 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgtaggactgcatattcacagtgactacagcctccttgatggtgcttctcaa
ctcccacagttggtcagtcgcgctgtggaattaggaatgccagcgatcgctcttacggat
catggggtgatgtatggggcgatcgaacttattaaaatctgccgcagtaagggtattaaa
cctattattggcaatgaaatgtatgtcctcaatgctgatgtcacagttcaacagcgagga
attaaaaaatatcatcaagtcgtcttggctaaaaatacccaaggctataaaaacttggtg
aaattaactactatttctcacttaaaaggttttcaaggaaagggaatttttgctcgtcct
tgtattaataaggaactattagaagagtatcacgaaggcttaattgttaccagtgcttgt
ttgggtggtgaggttccccaagctattcttcagaggcgcatggatatggcacgccaaact
gttgagtggtataaaagggtgtttggggatgattactatttagaaattcaagatcatggt
tccccagaagaccgcattgttaatgtcgctttggtgcaactggcgagggaatttgaagtc
aaaattgtggcgactaatgattcacactttatttcctgtaatgatgtggaagcacatgat
gccttattatgtattaatacacaaaagttaattactgaggataaccgattacgttatagt
ggcacagagtacctaaaatcggcggaagagatgatgcaactgtttcgagatcatctccca
gatgaggtgattaaagaagcgatcgctaataccttagaagtggcggaaaaagtggaaccc
tataccggaattttaggggaacctcgtattcctgattatccgatacctccgaatcatacg
gctgatacttatttagaagaaatcgcctgggaaggcttgaaaaaacgattaaatgctcaa
gggcgatcggaaatcaagcccgtctatcgagaaaggctcgaatatgaattaaaaatgatg
caaaaaatgggttttgctacctattttttagtagtttgggattacataaaacacgctaga
gataatcatatccctgtcggtcctggtaggggttcggcggcgggttccttggtcgcttac
gccttacaaattactaatattgatccggttcatcacgggttactatttgagcgttttctg
aacccagaacgaaaatctatgccggatattgatacagatttctgcatagaccgccgtgat
gaaatgattaaatatgttacctccaaatatggggaagagaaagttgctcaaattatcacc
tttaaccgcatgacttctaaggcggtactcaaagatgttgctagggtgttaggaataccc
tatagcaaatcggatcaaatggcaaaaatgattccggtatctcgtggtaaaccgactaaa
ttaaaggtgatgatttctgaccaaagtccatccccggaatttaaacaagcatacgataat
gactttgtacccattaaaaatgatgctggtgaggaagtgggaactattgctgtgcgccag
tgggttgacatggcaattcgtattgaagggactaacaaaacctttggagttcacgcagcg
ggggtggtgatttctaaacagcctttagatgaaattgtccctcttcaacggaataatgat
gggtcggtcattactcaatattttatggaagatatagaagccctgggtctgttaaaaatg
gactttttgggcttaaaaaacttgacgattattcaaagaactttaaactatatttcccaa
aatcatcacctagatattgacccctataatttagccgctgacgaacgtaaagccatggat
attctggctaaaggtgcggtgaaaaaaatgccggaggatgtggcgaaaacctataagatt
ttggaaagaggagatttggaaggtttatttcaactagaatcttcgggaatgcgtcagatt
gtgaaggacttaaagccttccagtattgaggatatttcttctattttggcattgtataga
cccggacctttagacgctggtttaattcctcagtttattaatcgtaagcataaacgagaa
ccaattcgctatgagcataaacttttggaacctattttgaatgagacctatggaattttg
gtctatcaagaacaaattatgaaaatggctcaagatttggcggggtattctttgggtcag
gcggacttgctgcgacgtgctatggggaaaaagaaagcatcggaaatgcagaagcatcgg
gaaacttttattgatggtgcgacgcgcaatggagtcccccaaaatatcgcagaacatctg
ttcgaccaaatggttaagttcgctgaatattgttttaacaaatcccattctaccgcctac
ggttacattacttatcagacggcttacttaaaggctaattatccgacagagtatatggcg
gctttgctgacggagaatagtggcaatactgacaaggttagggcttatattgaatcctgt
aagcatttgggtattgatgtagttccacctgatattaatcgctctaatgtggattttacg
cctatagaaaataggattgtatttgggttgtcggcgattaaaaatgtgggagatggcgcg
attgaacatttgctatctgtacgagaggaagggggaccttttcgcagtttggcggatttg
tgcgatcgcattaatctacaaatggttaatagtcgcgctttggaatctttaattaaatcg
ggtgcttttgatagtctccatgctaaccgcaagcaatcaattgaatatttgaatatagtt
attccttgggcgcaagatagggcgaaaaatcgagaaattggtcaaacgaatttgtttgat
ttggtcaattatgcaactactgagagtaattcaccttcgggagaacctgcttttccgaaa
ggtgatgattatgcgcctaaagataagttgcaatttgagaaggaattactaggcttttat
gtttcggatcaccctctcaagtctttgttagactcagggatactcccggataatgtgact
ttggataaactgccagaacaaaagtcaaaagctgctgttaaggtggcggtgattttaatt
aatattaagccccatttgactaaaaaaggcgatcgcatggcgtttctactactagaagat
ttgaccggacaaattgatgctgtggtgtttcctagtagttatgaggcggtacaacaggag
ttaaaagaaaatgcggttgttgtggttgagggtaaggtggaaaaacgggatgatcagact
caaattattgtggacgctatcaagtctgctgatgagttaattaaaccgaataatcagcca
ggttccccctcgcaacttccgcctaatttggcggcttcttcagtgattcaactctgttta
actcctgaagaaatttgccaattggaaaggttacaaattctcaaaggcattttggaagaa
tatcgaagtaatcaaggcttgggaagggttcctattcaagccattgttgatggtcaagtt
tcgcctaaaccattggtacgctttggctctcaattctgggtagaaaatcaagaggcgatc
gtacaacagttaaaaacttctggttttaccgttgatatactatcaattgataatgaataa
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