Limnospira fusiformis: HFV01_20245
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Entry
HFV01_20245 CDS
T06534
Name
(GenBank) VacB/RNase II family 3'-5' exoribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lfs
Limnospira fusiformis
Pathway
lfs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lfs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HFV01_20245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lfs03019
]
HFV01_20245
03016 Transfer RNA biogenesis [BR:
lfs03016
]
HFV01_20245
Enzymes [BR:
lfs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HFV01_20245
Messenger RNA biogenesis [BR:
lfs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HFV01_20245
Transfer RNA biogenesis [BR:
lfs03016
]
Prokaryotic type
tRNA degradation factors
HFV01_20245
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
OB_HELZ2
OB_cyt-4
Motif
Other DBs
NCBI-ProteinID:
QJB29628
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All DBs
Position
4206468..4208759
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AA seq
763 aa
AA seq
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MEFSIATLLANFTEDKSVAPKALEKKLTSDEESLRKFQIAIDALERIGLLEKDKGRYRRI
EQESIVEAKLRCSSKGFCFAIQDAESAEDVYIRESHLSTAWNGDRVLVRIIKEGSRRRSP
EGEVYLILERANPSVLARVKETKKGYRAVPLDDRLLFEMNLVNPPEELVDAVDHLVHVEV
VRYPLGLHRPVGRVVQVLGSDAEEAEDLDIVCCKHDLPRSFPKSVLQETEILLAASATLK
NSDLENRLDLRDEPTLSFSPDLGNPEFSVLKPEDEPCPYTIDHALSLQETDSGNWKLAVH
IADSSHYIQPDTSLDREARRRGIGIYLADKYIPIVPAPLSCDRISLVTGEDRLALSIMIE
LGPTGKILEYEIQPSIVRVDRQITYQEAQSILDGESSEDKIIEDLLEVSRAIRQMRELRG
GFEMNLPDTHCHFNDEGELGPMVSGTKLVSQAMVSELMILANQVVACHLQSLGVPAIYRV
QAAPDPADVAELIKLSIHHGLELELDDEAEIQPQDFQVFTQALKNTRAERVLTYLLEDSL
KPTVYSTVPKLHFGLALPAYTHCTSPISRYCDLQICRVLKAVFEEGRDRRSTRSKEPVNL
HHSSSEGKISWNVLPSELQHDLETQFAQLVVHLSERESVAADAEEDLEGLKKTGFMKERT
GQTFIGLITGVQSYGFFVEIELESPGGSTLRVEGLVHVSSLKDDWYEYRSRQQTLVGRKN
RNQYRLGDNVEVQVKSVDYYRQQIDLVAVGGGSEAIDDHDDSF
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atggaattttcaatcgctacactgttagccaactttacagaggataaatctgtagccccc
aaggctctcgaaaaaaaactgacctctgatgaagagagtctgcgaaaatttcagatcgcc
attgatgctttagagcggattggccttttggaaaaagataagggccgctatcgtcgtata
gaacaggagagtattgtagaagccaaattgcgatgttccagcaaaggcttctgctttgcg
attcaagacgcggaaagtgccgaggatgtctacatccgggaaagtcacttgagtaccgcc
tggaatggcgatcgcgtcctggtgagaattattaaagaaggctcccgtcgtcgttccccc
gaaggagaagtttatctaatcctagagcgagctaacccctccgtactcgctcgcgtcaaa
gaaaccaaaaaaggatatcgcgccgtccccctagatgaccgattgctatttgaaatgaat
ctggtcaaccccccagaggaactcgttgatgcagtcgatcacctggttcatgtcgaagta
gtgcgctatcctctgggtcttcatcgccctgtgggtagggtggtacaagttctgggttct
gatgctgaggaagcagaagacctggatattgtttgttgtaaacatgatttaccccggtcc
tttcccaaaagtgtactacaggaaaccgaaatcctcctagcagctagtgcgactctcaaa
aatagcgacctggaaaatcgacttgatctgcgcgacgagccgactctttcctttagcccc
gatttgggaaatcccgaattttctgtcttaaagccagaagacgaaccgtgtccatatacc
attgaccacgccctcagcttgcaagaaaccgattccgggaactggaaattagcggttcat
atcgccgatagctcccattatattcaaccagacacctccttagatcgcgaagccaggcgg
cggggtatcggcatttacttagccgataaatatattcctattgttcccgctcccctcagt
tgcgatcgcatttctttagttacaggagaagatcgcctggctttgtccatcatgattgaa
ctaggtccgactggaaaaatcctagaatatgaaattcagcctagtatcgtccgcgttgac
cgacaaataacttatcaggaagcccaaagtattcttgatggcgaatcttccgaagataag
attatagaagacctcctagaagtcagtcgcgccattcgacaaatgcgggagttgcgcggc
ggttttgaaatgaatcttcctgatacccattgtcattttaatgacgaaggggaactcgga
cccatggtttctggcactaaattagtctctcaggctatggtatctgagttgatgatttta
gctaatcaggtagttgcttgccacctgcaatcccttggggttcctgctatctatcgcgtt
caagccgccccagaccccgctgatgtcgctgaattgatcaagttgtctattcatcatggc
cttgaactagagcttgatgatgaagccgaaattcaaccccaagattttcaagtatttacc
caagctctgaaaaatactcgtgccgaacgggtattaacttatctacttgaagatagtctc
aaacctactgtttatagtaccgttcctaaactgcattttggcttggcattacccgcctat
actcactgtacctcacccatttctcgctattgtgacctgcaaatttgtcgggttctcaaa
gccgtatttgaagagggacgcgatcgccgttccactcgttccaaagaaccagttaacctc
catcattcctcatcagagggcaaaatttcctggaatgtcttaccttcagagttacaacat
gatctcgaaacccagtttgctcaactcgtcgttcatctcagcgaaagggaaagcgtcgcc
gctgatgctgaggaagacctagagggactcaaaaaaactgggtttatgaaagaacgcacc
ggtcaaacttttatcggtttaattactggggttcagtcctatggcttttttgtcgagatt
gaactagagtctcctggtggttcaactctcagggtcgaagggttagttcatgtgtcttct
ctgaaagatgactggtacgaataccgttcccgtcagcaaaccttagtcggtcgcaaaaac
cgcaatcagtaccgtcttggcgataatgtggaagttcaggttaagagcgtagactactac
cgtcaacagattgatttggttgctgttggtggcggtagtgaagctattgatgaccatgac
gatagcttttag
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