Limnospira fusiformis: HFV01_23635
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Entry
HFV01_23635 CDS
T06534
Name
(GenBank) VacB/RNase II family 3'-5' exoribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
lfs
Limnospira fusiformis
Brite
KEGG Orthology (KO) [BR:
lfs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lfs03016
]
HFV01_23635
Enzymes [BR:
lfs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HFV01_23635
Transfer RNA biogenesis [BR:
lfs03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
HFV01_23635
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNB
HTH_RNase_II
CSD_RNase_II
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
QJB29664
LinkDB
All DBs
Position
complement(4889663..4891681)
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AA seq
672 aa
AA seq
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MEKGTLVEFRHHGERRLAVVDRPEGKKHWILVDDQGNSHTVHPRQITYEVGGTTYRPADI
PSFYEEIQPYLDPASLEIAWEILIEEGETVDPKGMALLLFSEETPAQCYASHLLLCNDKL
YFKQKGDRYEPRPPNQVAEIKHQQEVEQQREQETQLFWQRVEQCLAGEVVEWRGSDRTRL
DALERFALYGEEASHTGPALETLSSLNRPQTPSASFQLLVDLGIWSLHENLSLWRSQIPT
QFPAKVLDVAQYYLQSPQPDPDQGHRFDLTHLKVYTIDDESTREIDDGVSLEFLEDGTQK
IWIHIADPTRLITPGDELDLEARRRTTSVYLPTGMIPMFPPELATGPMSLVQGKICCALS
FGVVLNEDGSLKDYSIHTSIIKPTYRLTYDDVDEMLHLGIKAEPEIEILGQLAKRRQQWR
SSQGAISIYMPESMIKVEGDEVIVKLLDDSLSRQMVAEMMILTGEVAARYGQEHNLALPY
RSQPQPELPPEEELLQLPAGAVRACALRRYMPRSEVSLTPARHASLALETYTQVTSPIRR
YSDLLAHFQIKAHLRGDDPPFSVEQMQEMVMSLGPAVKEASKVERETNRYWSLEYLRRQT
DEVWEAILLRWLREDSNLGLVMLEELGLELPMRFNRDIELGDRFEVKVTHSDPRQDVIQF
QEIISPATEPAV
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
gtggaaaagggaaccttagttgaattccgtcatcatggggagcgccgtctcgctgtggta
gatcgccctgaaggaaaaaagcactggatcttagttgatgaccagggaaattcccatacc
gttcatcccagacaaattacctatgaggtagggggaacgacttatcgtcctgctgatatt
ccctctttttatgaagaaatacaaccctatctagatccagctagtttagagatagcctgg
gagattttgattgaagagggggaaacagtagaccccaaaggaatggcattgttgctattt
tcggaggaaactccagcccagtgttatgccagccacctgttgctatgcaatgataaactc
tactttaaacagaagggcgatcgctatgaacctcgccctcccaaccaggtagcagaaatc
aaacatcaacaggaagttgaacagcaacgggaacaggaaacccaactgttttggcagcga
gttgaacaatgtctagcgggagaggtggtagaatggcgggggagcgatcgcactcgcctt
gatgctttagaacgttttgctctttatggggaggaagcatcccataccggacccgcctta
gaaaccctaagcagtcttaatcgccctcaaactcccagtgcctcttttcaattgttggta
gacttggggatatggagtctgcatgagaatctttccctatggcgcagtcagatcccaacc
cagtttcccgcaaaggtgctagacgtggctcaatattatttgcaatctccccaacctgac
ccggatcaaggtcatcggttcgatttaactcatctgaaggtctacaccattgacgacgaa
agcacccgcgaaattgatgatggagttagcctagaattcctggaagacggaacccaaaaa
atttggattcacattgctgaccctactcgtctaattacaccgggagatgaactagaccta
gaagcgcggcgcaggacgaccagcgtttacctaccgacggggatgattcccatgttcccc
ccagaactagccacggggccgatgagtttggtacagggtaaaatttgctgtgccttgagc
ttcggggtagtgctgaatgaggatggcagcctgaaggattatagcattcatacgagcatc
atcaaacctacctaccgcctcacctatgatgacgtggatgagatgctgcacttgggtatt
aaggctgaaccagaaatcgagattttaggacagttagccaaacgtcgccaacaatggcgt
tcctcccaaggggctattagtatttatatgccagaatcgatgatcaaggtggagggggat
gaggtcattgttaaactccttgatgattctctgtctcgccaaatggtggcagaaatgatg
attttgactggggaggtagcggctcgctatggtcaagagcataatttagcattaccctat
cgcagccagcctcaaccggaactacccccagaagaggagctgctgcaactaccagccgga
gcggtcagagcctgtgcattgcgtcgttatatgcctcgcagtgaggttagcttaactcca
gctcgccatgcaagtttagccctggaaacttatacgcaggtgacttcccccattaggcgt
tatagcgatctcttggctcacttccagattaaggctcatttgcggggagatgatccacct
ttttcggtggaacaaatgcaggaaatggtgatgagtctcggtccggcggtgaaagaagcc
tcgaaggtggaacgggagactaaccgctattggagtttggaatatttgcgtcgtcaaact
gatgaggtctgggaagctattttgctgcggtggttgcgcgaggatagtaatttaggtttg
gtcatgctggaggaattagggttagagttaccaatgcgctttaaccgtgatatagaactt
ggcgatcgctttgaggtcaaagtgacccattctgacccacgccaagacgtgattcaattc
caggaaattattagcccagccacggaaccagcggtttag
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