Limnospira fusiformis: HFV01_24345
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Entry
HFV01_24345 CDS
T06534
Name
(GenBank) DNA-directed RNA polymerase subunit gamma
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lfs
Limnospira fusiformis
Pathway
lfs03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lfs00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HFV01_24345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lfs03021
]
HFV01_24345
03400 DNA repair and recombination proteins [BR:
lfs03400
]
HFV01_24345
Enzymes [BR:
lfs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HFV01_24345
Transcription machinery [BR:
lfs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HFV01_24345
DNA repair and recombination proteins [BR:
lfs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HFV01_24345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
Cas9-BH
Motif
Other DBs
NCBI-ProteinID:
QJB28354
LinkDB
All DBs
Position
5083622..5085514
Genome browser
AA seq
630 aa
AA seq
DB search
MPKIEQRFDYVKIGLASPERIRQWGERTLPNGQVVGEVTKPETINYRTLKPEMDGLFCER
IFGPAKDWECHCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGFIKLAAPVTHVWYLKGI
PSYMAILLDMPLRDVEQVVYFNAYVVLNPGNADNLSYKQLLLEEQWLEIEEQIYAEEGEL
VGVEVGIGAEAIARLLEDIPLEEEAEKLRTDIANAKGQKRAKLIKRLRIIDNFIATSSKT
EWMVLNVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIIRN
EKRMLQEAVDALIDNGRRGRTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRSV
IVVGPNLKMHQCGLPREMAIELFQPFVIHRLIRQNLVNNIKAAKKLIQRGDPSVWDVLEE
VISGHPVMLNRAPTLHRLGIQAFEPMLVEGRAIKLHPLVCPAFNADFDGDQMAVHVPLSI
EAQAEARLLMLASNNILSPATGRPIVTPSQDMVLGCYYLTAKNPKAVRGKDRYFSNLEDA
CVAYTHGLLDLHAEIWVRFDGEVDLDEPEEIDGEEKSADGSNLTKLYRGQKSGNLTRRVR
EDKDGNMISQYVRTTAGRIIFNKTVLDALV
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgcctaagatagagcaacgttttgattacgttaaaattgggttagcgtctccagaacgc
atccgacaatggggagaacgtactttacccaacggtcaagtggtaggggaagttaccaag
cccgaaactattaactaccgtaccctcaagccggaaatggatgggttgttctgtgagcgt
atttttggaccggctaaggactgggaatgtcactgtggtaaatataaacgagttcgacat
cgggggattgtttgcgaacgttgcggggtagaagttacagaatcgcgggtgcgacgacat
cgcatgggctttattaaactggcggctccggtgactcatgtttggtatctcaagggtatt
cctagctatatggcgattttgctggatatgcctctgcgagatgtggaacaggtggtttat
tttaatgcctatgtggtattgaatccggggaatgctgataatctatcctataaacaactg
ctgctggaagaacaatggctggaaattgaggagcagatttacgcagaagaaggcgaactg
gttggggtggaagtgggtattggcgctgaggcgatcgcccgtttattggaagatatcccc
ctagaagaagaagcggaaaaattgcgaacggatattgctaacgctaaaggtcaaaaacgc
gccaagctgattaagcgactgcggatcattgataactttatcgccaccagttctaaaacg
gaatggatggttttaaatgtgattccggtaattcccccggatttgcgaccgatggttcag
ttagatgggggtcgctttgctacttctgacctaaacgacctctatcgacgggtgattaac
cgtaataatcgcctggctaggttgcaggagattttggcgccggaaattattatccgcaat
gaaaagcgaatgctacaagaagcggtggatgccttaattgataatggtcgccgcggtcgg
actgtggtgggtgctaataaccgacctttgaaatctctctcggatattattgagggtaaa
caaggccgcttccgtcaaaacttgctgggaaaacgggttgattattcggggcgttctgtg
attgtggtgggtccgaatttgaaaatgcaccagtgcggactacctcgggaaatggcgatc
gaacttttccagccttttgtgattcatcgcctgattcgtcagaatttggttaataacatt
aaggcggcgaaaaagttgattcaacgcggcgatccgagtgtttgggatgtgttagaagag
gtgatttctggacacccagttatgcttaaccgtgcgccaactctccaccgcctgggaatt
caggcttttgaacctatgctggtggaaggaagggcgattaaattgcatcccctggtctgt
ccggcttttaacgctgactttgacggtgaccaaatggctgttcacgttcctttgtctatt
gaggctcaggcggaagcgcgtttgttgatgttggctagtaataatattctgtctccggct
acgggaagacctattgttactccttctcaggatatggttttgggttgctattatctgact
gccaaaaatccgaaggcggtgcgaggaaaagatcgctatttcagtaacctggaagatgct
tgcgtggcttatactcacggtttgctggatttacacgctgagatttgggtgcgttttgat
ggggaggttgacctagatgaacctgaagaaattgacggagaggaaaagtcggctgatgga
agcaatctgacgaaattatacaggggtcaaaaaagtggcaatttgaccaggagagttcga
gaagataaggacggtaacatgatttcccaatatgtgcggacaacggctggtcgaattatc
ttcaataaaaccgtgctagatgctctggtttaa
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