Limnospira fusiformis: HFV01_25520
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Entry
HFV01_25520 CDS
T06534
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lfs
Limnospira fusiformis
Pathway
lfs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lfs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HFV01_25520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lfs03019
]
HFV01_25520
03400 DNA repair and recombination proteins [BR:
lfs03400
]
HFV01_25520
Enzymes [BR:
lfs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HFV01_25520
Messenger RNA biogenesis [BR:
lfs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HFV01_25520
DNA repair and recombination proteins [BR:
lfs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HFV01_25520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
QJB28545
LinkDB
All DBs
Position
complement(5333398..5334858)
Genome browser
AA seq
486 aa
AA seq
DB search
MIPPSDSNTTEQVKNALKRFWGYDDFRPPQQEIVEAIIRGQDALIVLPTGGGKSICFQLP
ALLKNGLTIIVSPLVALMENQVKELHDRHLSAGIIHSQMSPIQRRQTLHQLQNNSLRLLY
LSPETLLSKPVWNLINKPQVSINGLILDESHCLVQWGDTFRPDYRRLGAVRPTLLKHKPP
GSKIAIAAFTATADPTAQNTIKTVLQLQDPQEFILSPYRDNLHLKIRRVFTPMGRRKCLL
SLMKQHQKQTGLIYVRTRRDSQELTAWLETFGYKTAPYHAGLSAEKRRKIESQWLEGKLQ
FVVCTSAFGMGINKPNVRWVVQFQPPLLLSEYIQEVGRAGRDGKPAEALTILCEPTGLLY
PEDRQRLSFLQDNFRQQMMTAKPLIKKLPQKGHLETVISRFPDSAIALSLLHSQGKLEWV
DLFNYQIKDTSLSLTENSNTVAIRQMTRYFATRDCRWKFILEAFGLGTEAQSFRCGHCDN
CDRHGS
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgattccaccttctgattctaacacaactgaacaagtaaaaaacgccctaaaacgtttt
tggggttatgatgattttcgcccccctcagcaggaaattgttgaggctattatcaggggt
caagatgcgttgattgttctgcccactggaggcggtaaatctatctgttttcaactgcca
gcgttattaaaaaatggcttaaccataatagtttcgccgctggtagccttgatggaaaat
caggtaaaagaattacacgatcgccatttaagtgcgggtattattcatagtcaaatgtcc
cccatacaacggcggcaaactttacatcaattgcaaaacaacagcctacgattgctatat
ttatccccggaaactttattaagtaaacctgtgtggaatttaatcaataaaccccaggtt
tctattaatggtttgattttagatgaatctcactgtttagttcaatggggggatacattt
agacctgattatcgccgtttgggggcggtgcgtcccactttattaaaacataaaccacca
ggtagcaaaatagcgatcgctgcctttaccgctaccgctgaccccactgcccaaaacact
attaaaacggtgttacagttacaagatcctcaagaatttatactgagtccatatcgagat
aatttacaccttaaaattcgccgagtttttactcccatgggacggcgaaaatgcttgcta
agtttgatgaaacaacatcaaaagcaaaccggtttaatttatgttcgcacccgtcgagat
agtcaagaattgacagcctggctggagacatttggctataaaactgccccttatcatgct
ggactatcggcggaaaaaaggcgaaaaattgaatctcaatggttagaaggcaagctgcaa
tttgtggtgtgtacttctgcttttgggatgggaattaacaagcccaatgtccggtgggtg
gttcagtttcaaccgcccctattactatcagaatatatccaagaagtaggaagggctgga
cgagacggaaaaccagcagaagccttgactattctctgtgaaccgacgggcttgctgtac
cctgaagatagacaaaggctgtcgtttttacaagataattttcgccaacaaatgatgacc
gctaaacccttgattaaaaaacttccccaaaaaggccatttagaaacagtgatcagtcgt
tttcccgacagtgcgatcgccttgtctcttttgcattctcagggaaaattagagtgggtt
gatttgtttaattatcaaattaaagatacatcactatctttaactgaaaattctaacaca
gttgcgattcgccaaatgactcgctattttgctacccgtgactgtcgctggaaatttata
ctagaggcgtttggcttggggacagaagcacaatcatttcgctgtggtcattgtgacaac
tgcgatcgccatgggtcttaa
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