Limnospira fusiformis: HFV01_29285
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Entry
HFV01_29285 CDS
T06534
Name
(GenBank) RNA polymerase sigma factor, RpoD/SigA family
KO
K03087
RNA polymerase nonessential primary-like sigma factor
Organism
lfs
Limnospira fusiformis
Brite
KEGG Orthology (KO) [BR:
lfs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lfs03021
]
HFV01_29285
Transcription machinery [BR:
lfs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HFV01_29285
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HTH_10
HTH_Mga
MerR
MerR_1
Terminase_4
DUF5315
Motif
Other DBs
NCBI-ProteinID:
QJB29742
LinkDB
All DBs
Position
complement(6139904..6140863)
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AA seq
319 aa
AA seq
DB search
MKTAKTSDTDSVRAYLREIGRVPLLTHEQEIVYGKQVQQATLLQEKRNELAKQLGYEPTE
AQWAELVNLSVAQLQHILHQGQLAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIG
MQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLA
QQLGRAATMNELAAELDLTPKQIREYLEKSRLPLSLDLRVGDNQDTELVDLLEDTSNSPE
QFALNSSLRSDLESLMTDLTDQQRQVLALRFGLDDGQTLTLAKIGDRLNISRERVRQIER
EALTKLRKRKQDVNDYLAS
NT seq
960 nt
NT seq
+upstream
nt +downstream
nt
atgaaaactgctaaaacctcggacacagattcggtgcgggcctacctgcgagaaattggt
cgtgttcctctgctgacccatgaacaagaaattgtctatggtaaacaggtacaacaggca
actttattgcaggaaaaacgcaatgagttggctaaacaattaggctatgaacctactgag
gctcaatgggccgaattagttaacttgtctgtggcacaattgcaacatatcttgcatcag
ggtcaattagccaagcgtaagatggtagaagctaatctgcgtctggtggtctctgtggcc
aaaaagtatatcaagcgcaatgtggatctgctcgatctcattcaggaaggtactatcggg
atgcagcgcggagtcgaaaagttcgatcctactaagggttatcggttctctacctatgcc
tattggtggattcgacaagcaattacccgcgcgatcgctgaaaaaggccgtactattcgc
ttgcccattcatatcacagaaaaacttaataaaatcaaaaaggcacagcgtcaacttgca
caacagttaggccgagcagctactatgaatgaattggctgctgagttggatctcacccct
aagcagattcgtgagtatctggaaaaatcacgtcttcctttatctctggatctgcgggtt
ggtgataatcaggatacggaattggttgacctgttggaagataccagcaattcccctgag
cagtttgctcttaattcttctttgcgatcggatttagaatctttgatgactgatcttact
gaccagcaacgacaggttttagctctgcgctttggtttggatgatggacagactttaact
ctcgctaaaattggcgatcgccttaatatcagtcgtgaacgagtccgacagattgaacgg
gaggctttgactaaacttcgtaagcgtaagcaggatgttaatgattacctagctagttaa
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