Lysinibacillus fusiformis: HR49_02815
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Entry
HR49_02815 CDS
T03655
Name
(GenBank) RNA polymerase subunit sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
lfu
Lysinibacillus fusiformis
Pathway
lfu02020
Two-component system
lfu02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
lfu00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
HR49_02815
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HR49_02815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lfu03021
]
HR49_02815
Transcription machinery [BR:
lfu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HR49_02815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_3
HTH_IclR
Sigma70_r4
HTH_23
MarR
HTH_38
HTH_20
DUF3837
Motif
Other DBs
NCBI-ProteinID:
AJK86215
LinkDB
All DBs
Position
complement(563475..564761)
Genome browser
AA seq
428 aa
AA seq
DB search
MQLSIKQTQELQIVMSTQLRQAIELLQYSTQELEQYIREQELVNPLIELSEPALKEHLQI
PKMSSGHYNNWHLSTKCEKNIRDELFQQVRLTFDNEKDIQLLKHIIYHLDDNGYYEQPIQ
TSYNDLEIEKGVHLLQTIGPLGMGARNLKECLLLQTIYCPNSPAHADTIISNYLEELAHN
NWKKILKELDITLNDLQMIYLFIQSLQPKLSSLFYQELVHTTIPDIIVDIVDGGITFSLN
DYYLPKISIHADYFPYIKAHSSEKSYFKKHLADYHWLVNSIEQRRNTMINIMKALIEKQK
NFFLNGFDAMQPLTLREIADQIDVHESTVSRITTNKYVQTAFGTFELKELFSSKLSTANG
QSVSQIKVKSLLSDYIKSENKAKPFSDQKIAEYFNAALGIEISRRTIAKYREDMSIPSSA
RRKIIPFQ
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgcaactttctattaaacaaacacaagaattacaaatcgttatgtctacccaacttcgt
caggcaatcgagctactccaatactcaactcaggaattagaacaatatatacgtgaacaa
gagctcgttaatccgttaatcgagctaagtgaaccagcacttaaagagcatctacagatt
ccaaaaatgagtagcggacactataacaattggcatctttctacaaaatgtgaaaaaaat
attcgtgatgagctgttccagcaggtcaggctaacatttgataatgaaaaagacattcag
ctcttaaaacatattatttatcatttagatgacaatggttattatgagcaacctatacaa
acttcttataatgacctagaaatagaaaagggcgttcatttattacaaacgattggtcct
ttaggaatgggtgcacgtaatttaaaggaatgtttactattacaaactatttattgtcct
aacagccctgctcatgccgatactattatttctaattatctagaagagcttgctcataat
aattggaagaaaatattaaaagagctggatataacactaaatgacttacaaatgatctat
ctttttatacaatcattacagccaaaactaagctcattattttatcaggaattggtacat
acgacgataccagatattattgttgatattgttgacggtgggatcaccttttcattgaac
gactattatttaccaaagattagtattcacgctgactactttccttatataaaagctcat
tcctcagaaaagagttattttaaaaaacacttagctgactaccactggctagtgaacagc
attgaacaacgtcgaaatacaatgatcaatattatgaaggcccttattgaaaagcaaaaa
aatttctttctgaatggcttcgacgccatgcaaccacttacgttgcgtgaaattgctgac
caaatagatgttcatgaatcgacggtaagtcgtattacaacaaataaatatgtacaaact
gcttttggcacctttgaattaaaggaattattcagctctaaattgtcgacagccaatggt
cagagtgtatcacaaataaaggtgaagtctttgctgtcagactatatcaagtcagaaaat
aaggctaagcccttctccgatcaaaaaatagctgaatattttaacgctgctttaggcatt
gaaatatctcgacgtaccattgccaaataccgcgaggacatgagtatcccgtcctctgca
cggcgtaaaataataccctttcaataa
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