Lysinibacillus fusiformis: HR49_06465
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Entry
HR49_06465 CDS
T03655
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
lfu
Lysinibacillus fusiformis
Pathway
lfu03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lfu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HR49_06465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lfu03400
]
HR49_06465
Enzymes [BR:
lfu01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
HR49_06465
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
HR49_06465
DNA repair and recombination proteins [BR:
lfu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
HR49_06465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
CusF_Ec
RBD_LARS1
TRAF_BIRC3_bd
Motif
Other DBs
NCBI-ProteinID:
AJK86832
LinkDB
All DBs
Position
1310503..1311375
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AA seq
290 aa
AA seq
DB search
MPELPEVEGVVQALKPKVEGRTIQHVKLSERVHFSFSEGKQCIVKQAEPDAFELTLSEMT
ITKIERRAKYIFFHLLKDEVPYVLVSHLGMTGAWFVVNSPEDIDEAKFQKHIHATFKMAD
GGYLIYSDIRRFGELRFLTKIEDHVPLTKMAPEPFDELACDFFITKSTLSKYANKAVKEV
IMDGQVVSGCGNIYATEALFAQKIHPARKMNRISEKRKRALFEEIVAVLRQSIEAGGSTI
SDYRNINGEAGSMQNRLKMYGKKICPTCETATSQMTIGGRTSVFCPNCQH
NT seq
873 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattaccagaggtagaaggtgtcgtccaggcattgaagccaaaggttgaagga
cgtacaattcaacatgtaaagctatctgaaagggtacacttttcttttagtgaggggaaa
caatgtattgttaagcaagcagagcctgatgcatttgaattaacgttgtctgaaatgacg
attacaaaaattgaacgacgtgcgaaatatattttctttcacttattgaaagatgaggtt
ccttatgtacttgttagtcacttaggaatgacaggtgcatggtttgttgtgaattcacca
gaagacatcgatgaagcaaaattccaaaagcatatccatgctacatttaagatggctgat
ggtggttacttaatttattcagatatacgacgctttggtgaacttcgatttctgacaaaa
attgaagatcatgtaccattaacaaaaatggcgccagagccgtttgatgaattagcgtgt
gatttttttataacaaaatcaacattatcgaaatatgcgaataaagcagtaaaagaagtg
attatggatgggcaagtcgtttcgggctgtggcaatatttatgcaacggaggcgctgttt
gctcaaaaaattcatcctgcacgaaaaatgaatcgtataagtgagaagcgtaaacgagca
ctatttgaggagatcgttgctgttttgcgtcaaagtattgaagcgggtggttcaaccatc
tctgattatcgaaatattaatggggaagctgggagcatgcagaatcgtttgaaaatgtat
gggaaaaagatatgcccaacatgtgaaacggcaacaagtcagatgacgattggtgggcga
acatcggttttttgtccaaattgtcaacattaa
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