Lysinibacillus fusiformis: HR49_12510
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Entry
HR49_12510 CDS
T03655
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lfu
Lysinibacillus fusiformis
Pathway
lfu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lfu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HR49_12510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lfu03019
]
HR49_12510
03400 DNA repair and recombination proteins [BR:
lfu03400
]
HR49_12510
Enzymes [BR:
lfu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HR49_12510
Messenger RNA biogenesis [BR:
lfu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HR49_12510
DNA repair and recombination proteins [BR:
lfu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HR49_12510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
T7SS_ESX_EspC
Motif
Other DBs
NCBI-ProteinID:
AJK87905
LinkDB
All DBs
Position
complement(2518559..2520331)
Genome browser
AA seq
590 aa
AA seq
DB search
MEQARQMLQHHFGYEAFRQGQAQIIEQTLHGQSSLCVMPTGGGKSICYQIPALMLEGLTI
VISPLISLMQDQVEALRAANIPAAYINSTLTAQEVNETMQLASAGYLKLLYIAPERLESA
SFLQALSYLSVPLIAVDEAHCISQWGHDFRPSYRSIQKLFTLWQHKPTVLALTATATPAV
CEDIRKILTIDEDATVMTGFTRDNLALSVLIGENKERYIKNYLQKNKQEVGIIYAATRKA
VDAIYDMLSRSGEAIAKYHAGLSEDLRMAEQERFLKDEARIMVATNAFGMGIDKSNVRFV
LHYQMPRNMESYYQEAGRAGRDGLPSACILLYASGDVQTQRFLIDQSQDEARIPQELAKL
QTMVDYCHTEGCLQNAILAYFGEVQEEPCGRCNNCNDGRIVMNVTEDAQKVLACVVRMGQ
KFGKTMVAQVLIGSKNQKMNEFGFARLSTYGILKGHYSSKDVSNFIEFLIAEGLLAVKHG
TYPTIYVSADGKEVLLGQRQVMRKEAVTVKKLVDNDPLFEHLRVLRKEIADEEKVPPFVV
FSDKTLRDLCDKKPAVLDDLRHISGIGEVKFDKYGKRFFEALQSFLETPI
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atggagcaagcaagacaaatgctacagcatcattttggctatgaggccttccggcaagga
caagcccaaattattgaacaaactttacatggacaatcgagcctttgtgtgatgccaaca
ggtggagggaagtctatttgttatcagattccagcgttaatgcttgaggggctcacaatc
gtcatatcgcctcttatttctttaatgcaagatcaggtggaagctttacgagcagccaat
attccagctgcctatataaatagtacattaacagcacaagaagtgaatgaaacgatgcag
ctagctagtgctggttatttaaaactactgtatatcgcacctgaaagacttgaaagtgct
tccttccttcaagcattgtcctatttatccgtgccattaattgcggtggatgaagcacat
tgtatttctcaatggggtcatgattttcgaccaagttatcgctccattcaaaagcttttc
acactgtggcagcataagccaactgttttagcgcttaccgcgactgcgacacctgctgtt
tgtgaggatattcggaaaatattaaccattgatgaagatgcaaccgtgatgacaggcttt
acacgtgataatttagccctttcggtgttaattggtgaaaataaagaacgttatattaaa
aattacttgcaaaaaaataaacaggaagtcggtattatttacgccgctacacgaaaagcg
gtagacgcaatttatgacatgctaagtcggtcgggtgaagcgatagccaaataccatgct
gggctttcagaggatctacggatggctgagcaggagcgttttttaaaagatgaggcacgc
attatggtggctaccaatgcctttggtatggggatcgataaaagtaatgtgcgctttgtg
ttgcactatcaaatgcctcgcaacatggagagctattatcaagaagcaggaagagctggt
cgagatggacttccaagtgcttgtatcctactgtatgcctccggagatgttcaaacccaa
cgttttctcatagaccaatcacaagacgaagcacgaataccacaggaattagcgaagctc
caaacaatggtcgattattgccatacagagggctgcctacaaaatgcaattttagcttac
tttggtgaagtacaagaggagccttgtggtcgctgcaataattgtaatgatggccgtatt
gtgatgaatgtgacggaggatgcacagaaggtactcgcttgtgttgtacggatgggccaa
aaatttggcaagacgatggtggctcaagtacttatcggctccaaaaatcaaaaaatgaat
gaatttggatttgcacgtttatcgacctatggcattttgaaagggcattattcgtctaaa
gatgtctcaaactttattgagtttctaattgcagaaggcttattggcagttaagcacggc
acgtatcccactatttatgtgtcagccgatggcaaagaagttctactagggcaacgacag
gtcatgcggaaggaagctgtaacggttaaaaaactggttgataatgatcctttatttgaa
catttacgtgtgttacgaaaagaaattgcagatgaagagaaagttcctccatttgtagta
ttctcagataaaacattacgtgatttatgtgacaagaagcccgcagtactggatgattta
cgccacattagcggcatcggtgaagtgaaatttgataaatacggcaagcgtttctttgag
gcactacaatcatttttagaaacacccatctaa
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