Lysinibacillus fusiformis: HR49_16735
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Entry
HR49_16735 CDS
T03655
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lfu
Lysinibacillus fusiformis
Pathway
lfu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lfu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HR49_16735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lfu03019
]
HR49_16735
03400 DNA repair and recombination proteins [BR:
lfu03400
]
HR49_16735
Enzymes [BR:
lfu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HR49_16735
Messenger RNA biogenesis [BR:
lfu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HR49_16735
DNA repair and recombination proteins [BR:
lfu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HR49_16735
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
SNF2-rel_dom
AAA_22
DUF5637
PAC_bac
RepB_primase_C
Motif
Other DBs
NCBI-ProteinID:
AJK88660
LinkDB
All DBs
Position
complement(3352419..3353861)
Genome browser
AA seq
480 aa
AA seq
DB search
MELEELLHKHFGYSSFRPGQREVIEAILQEKDVMALLPTGMGKSLCYQLPAYILDKPVLI
VSPLLSLMQDQVEELKRFGEKRVVALNSFLSLTEKRYVLHYLEQYRFIFTSPEMLLQQQM
QDKLAQVKLGLIVVDEAHCISQWGYDFRPDYLRIGEWLSRHNRPPLLALSATATSKVMQD
IRETLSLKEPFEFMYNVDRPNIHLGRIVLEDKADKACWLMRHVKETAGPGILYVSSRKRA
QQYSDAFLQAGIRTAAYHAGYGAEDRQFIQQQFIDGELDWIVATNAFGMGINKQDIRQVI
HESIPANIANYMQEIGRAGRDGESALAILLYSDGDEELAKFVVTGDLPSPQHVDRYEELI
SQQVLPAQMLKNGELGETAFRVLDYWMQQETKEQVKARLNHLALEKYHAVDEMLKIIQTK
DCIREHLVGYFGQKLQKKPENCCENCGIHYDEIKKERLTAEKKIEMISWERRLQQLLLGN
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atggaactggaagaactattgcataaacattttggttactcatcatttcgaccaggacaa
agggaagtcattgaagcaatacttcaagagaaagatgtaatggcattattgcccacagga
atgggaaaatcattgtgctatcagctcccggcctatattttagataaacctgtgctaatc
gtttctccgttgctttctttaatgcaagatcaggtagaggaattgaaacgttttggagaa
aagagggttgtcgccttaaattcctttttatctctcactgaaaaacggtatgtattacat
tatttagaacaatatcgttttatttttacctcaccagagatgctacttcaacagcagatg
caagacaaattagcgcaagtgaaattaggtttaatcgtagtggacgaggctcattgtata
tcgcaatgggggtatgattttcgaccagattatttacggataggtgagtggctatcaagg
cacaatcgacctccactgctagcactatcagcgactgcaacaagcaaggtcatgcaagat
attcgggaaacattatcgttaaaggaaccatttgaatttatgtataatgtggatcggcca
aatattcatttaggacgcattgttctagaggataaggcagataaagcgtgctggcttatg
cgacatgtcaaagaaactgctggcccaggaatactgtatgtttcctcacgcaaacgagcg
caacaatatagtgacgcatttttacaagcgggtattcgtactgcagcctatcatgcaggc
tatggggctgaggatcgccaatttattcagcagcagtttattgatggcgaattggactgg
atagtggcaacaaatgcttttggtatggggattaataaacaagatattcgtcaggtcatt
catgaatcaatacctgctaatattgcaaattatatgcaggaaattggtcgagcaggtcga
gatggtgagtctgcgcttgccattttactctatagtgatggtgatgaagagctagcgaag
ttcgttgttacgggtgatcttccgagtccacagcatgttgatcgctatgaggaactcatt
tcccagcaggtactgccagcacagatgttaaaaaatggggaactaggtgagacggcattt
cgtgtgttagactattggatgcaacaagaaacgaaggagcaagtgaaggctcgactaaat
catttagccctagaaaaataccatgcagtcgatgaaatgttgaagattatacagacaaaa
gactgtattcgtgaacatcttgtcgggtatttcgggcaaaaattgcaaaaaaaaccggaa
aactgttgtgaaaactgtggaatccattatgatgaaatcaagaaagaacgcttaacagcc
gagaaaaaaatagaaatgatttcgtgggaacgtcgattgcagcaacttttgctgggtaat
tag
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