KEGG   Lysinibacillus fusiformis: HR49_19440
Entry
HR49_19440        CDS       T03655                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
lfu  Lysinibacillus fusiformis
Pathway
lfu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lfu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    HR49_19440
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lfu03019]
    HR49_19440
Messenger RNA biogenesis [BR:lfu03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     HR49_19440
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C Lactamase_B Lactamase_B_2 Anti-Pycsar_Apyc1 RMMBL DUF4453 CFAP54_N DUF5548
Other DBs
NCBI-ProteinID: AJK89161
UniProt: A0A1H9DTY6
LinkDB
Position
3911546..3913213
AA seq 555 aa
MKFVKNDQAAVFALGGLGEIGKNTYGVQFQDEIILIDAGIKFPEDDLLGIDYVIPDYTYL
VRNVDKIKGLFITHGHEDHIGGIPYLLRQVNVPVYGGKLALGLLRNKLEEHGLLRTTKLI
EIKEDDVIKFRKTSVSFFRTTHSIPDAYGIVVKTPPGNIVHTGDFKFDFTPVGEPANLTK
MAEIGRDGVLCLLSDSTNAEKPNFTMSERTVGKSIDEIFRKVDSRIIFATFASNIHRLQQ
ATDAAIKYGRKIAVFGRSMDNAITIGRELGYINAPKDTFIDAQSINRLPANEVMILCTGS
QGEPMAALSRIANGTHRQIQIQPGDTVIFSSSPVPGNTVSVNKIINLLFRAGAEVIHGAL
NNIHTSGHGSQEEQKLMLRLMKPKFFMPIHGEYRMLKMHTHLAEDCDVPLENTFVMENGD
VLALSANEAHVAGRIPSGDVYIDGNGIGDIGNIVLRDRRILSEEGLVIVVVSVDMENQKI
VSGPDIISRGFVYMRESGTMINEAQKMLNRHLNETIQSKTPQWTELKNEITDVLGPYLFE
KTKRRPMILPIIMEV
NT seq 1668 nt   +upstreamnt  +downstreamnt
atgaagtttgttaaaaatgaccaagcagctgttttcgcgctcggcggactgggcgaaatc
ggcaaaaatacttatggcgttcaatttcaagatgaaattattttaattgacgctggcatt
aaatttccagaagatgacttactcggcattgactatgttattcctgactatacgtattta
gtacgtaacgtcgataaaatcaagggactatttattacacatggacatgaggatcatatt
ggcggtattccttaccttttacgtcaagtgaatgtcccagtctatggtggtaagctcgca
cttggcttattacgtaataaattagaagaacatggcttgctacgtacaactaaactcatc
gaaattaaagaagatgatgtcattaaatttagaaaaacatctgttagcttctttagaaca
actcatagtatccctgatgcttatggaattgttgttaaaacaccacctggtaatatcgtt
cacacaggtgactttaaattcgactttacacctgttggcgaaccggccaacctaacaaag
atggccgaaattggacgagatggcgtactttgcttactatcagatagtacaaacgctgaa
aagcctaattttacaatgtcagagcgtacagtcggcaaaagtatcgatgaaattttccgt
aaagtggatagccgaattatttttgctacatttgcgtcaaatattcaccgtttacaacaa
gcaacagacgcagcaataaaatatggaagaaaaattgctgtcttcggtcgctcaatggat
aatgcgattacaattgggcgtgagcttggttatattaatgctccaaaagatacatttatt
gatgctcaaagcattaatcgacttccagcaaatgaagtaatgattttatgtacaggctca
cagggtgaaccaatggctgcattatcacgtattgccaatgggactcatcgtcaaatccaa
atacaacctggtgatacagttattttctcttcttcaccggttccaggtaatactgtgagt
gtcaataaaatcatcaatttattgttccgtgcaggtgcagaagttattcatggtgcatta
aacaatatccatacttctggtcacgggtcacaagaagaacaaaaattgatgctacgttta
atgaaacctaaattctttatgcctatccatggtgaataccgtatgttaaaaatgcataca
cacttagcggaagattgcgatgtaccacttgaaaatacatttgttatggaaaatggcgat
gtattagcattaagtgccaatgaggcacatgtggctggtcgtatcccttctggtgatgtt
tatatcgatggtaatggtattggagatatcggcaatattgtattacgtgatcgtcgcatt
ctttctgaagaaggcttagttatcgtagtcgtaagtgtcgatatggaaaatcaaaaaatt
gtttcaggtcctgatatcatttctcgtggctttgtctacatgcgcgagtcaggtacgatg
atcaatgaagctcaaaaaatgcttaatcgtcatctgaatgaaactattcaaagcaaaact
cctcaatggacagagcttaaaaacgaaattacagacgttttaggtccttacctatttgaa
aaaacaaaacgtcgtccaatgattctaccgatcattatggaggtttag

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