Lysinibacillus fusiformis: HR49_19440
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Entry
HR49_19440 CDS
T03655
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lfu
Lysinibacillus fusiformis
Pathway
lfu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lfu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HR49_19440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lfu03019
]
HR49_19440
Messenger RNA biogenesis [BR:
lfu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HR49_19440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
RMMBL
DUF4453
CFAP54_N
DUF5548
Motif
Other DBs
NCBI-ProteinID:
AJK89161
UniProt:
A0A1H9DTY6
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All DBs
Position
3911546..3913213
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AA seq
555 aa
AA seq
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MKFVKNDQAAVFALGGLGEIGKNTYGVQFQDEIILIDAGIKFPEDDLLGIDYVIPDYTYL
VRNVDKIKGLFITHGHEDHIGGIPYLLRQVNVPVYGGKLALGLLRNKLEEHGLLRTTKLI
EIKEDDVIKFRKTSVSFFRTTHSIPDAYGIVVKTPPGNIVHTGDFKFDFTPVGEPANLTK
MAEIGRDGVLCLLSDSTNAEKPNFTMSERTVGKSIDEIFRKVDSRIIFATFASNIHRLQQ
ATDAAIKYGRKIAVFGRSMDNAITIGRELGYINAPKDTFIDAQSINRLPANEVMILCTGS
QGEPMAALSRIANGTHRQIQIQPGDTVIFSSSPVPGNTVSVNKIINLLFRAGAEVIHGAL
NNIHTSGHGSQEEQKLMLRLMKPKFFMPIHGEYRMLKMHTHLAEDCDVPLENTFVMENGD
VLALSANEAHVAGRIPSGDVYIDGNGIGDIGNIVLRDRRILSEEGLVIVVVSVDMENQKI
VSGPDIISRGFVYMRESGTMINEAQKMLNRHLNETIQSKTPQWTELKNEITDVLGPYLFE
KTKRRPMILPIIMEV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaagtttgttaaaaatgaccaagcagctgttttcgcgctcggcggactgggcgaaatc
ggcaaaaatacttatggcgttcaatttcaagatgaaattattttaattgacgctggcatt
aaatttccagaagatgacttactcggcattgactatgttattcctgactatacgtattta
gtacgtaacgtcgataaaatcaagggactatttattacacatggacatgaggatcatatt
ggcggtattccttaccttttacgtcaagtgaatgtcccagtctatggtggtaagctcgca
cttggcttattacgtaataaattagaagaacatggcttgctacgtacaactaaactcatc
gaaattaaagaagatgatgtcattaaatttagaaaaacatctgttagcttctttagaaca
actcatagtatccctgatgcttatggaattgttgttaaaacaccacctggtaatatcgtt
cacacaggtgactttaaattcgactttacacctgttggcgaaccggccaacctaacaaag
atggccgaaattggacgagatggcgtactttgcttactatcagatagtacaaacgctgaa
aagcctaattttacaatgtcagagcgtacagtcggcaaaagtatcgatgaaattttccgt
aaagtggatagccgaattatttttgctacatttgcgtcaaatattcaccgtttacaacaa
gcaacagacgcagcaataaaatatggaagaaaaattgctgtcttcggtcgctcaatggat
aatgcgattacaattgggcgtgagcttggttatattaatgctccaaaagatacatttatt
gatgctcaaagcattaatcgacttccagcaaatgaagtaatgattttatgtacaggctca
cagggtgaaccaatggctgcattatcacgtattgccaatgggactcatcgtcaaatccaa
atacaacctggtgatacagttattttctcttcttcaccggttccaggtaatactgtgagt
gtcaataaaatcatcaatttattgttccgtgcaggtgcagaagttattcatggtgcatta
aacaatatccatacttctggtcacgggtcacaagaagaacaaaaattgatgctacgttta
atgaaacctaaattctttatgcctatccatggtgaataccgtatgttaaaaatgcataca
cacttagcggaagattgcgatgtaccacttgaaaatacatttgttatggaaaatggcgat
gtattagcattaagtgccaatgaggcacatgtggctggtcgtatcccttctggtgatgtt
tatatcgatggtaatggtattggagatatcggcaatattgtattacgtgatcgtcgcatt
ctttctgaagaaggcttagttatcgtagtcgtaagtgtcgatatggaaaatcaaaaaatt
gtttcaggtcctgatatcatttctcgtggctttgtctacatgcgcgagtcaggtacgatg
atcaatgaagctcaaaaaatgcttaatcgtcatctgaatgaaactattcaaagcaaaact
cctcaatggacagagcttaaaaacgaaattacagacgttttaggtccttacctatttgaa
aaaacaaaacgtcgtccaatgattctaccgatcattatggaggtttag
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