Lysinibacillus fusiformis: HR49_21095
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Entry
HR49_21095 CDS
T03655
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
lfu
Lysinibacillus fusiformis
Pathway
lfu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lfu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HR49_21095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lfu03021
]
HR49_21095
03019 Messenger RNA biogenesis [BR:
lfu03019
]
HR49_21095
Transcription machinery [BR:
lfu03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
HR49_21095
Messenger RNA biogenesis [BR:
lfu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HR49_21095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
S1CSD-TOTE-2
NACHT
ATPase_2
AAA_22
AAA
AAA_25
DUF3418
AAA_24
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
AJK89460
UniProt:
A0A1E4R2S1
LinkDB
All DBs
Position
complement(4273338..4274621)
Genome browser
AA seq
427 aa
AA seq
DB search
MSALTIAQLENMTLKELYALARQYKISYYSKLTKKELIFAILKTRSEQEGYFFMEGVLEI
VSQEGFGFLRPINYSPSKEDIYISASQIRRFDLRNGDKVSGKVRPPKENERYYGLLQVDA
VNGEDPEVAKERVHFPALTPLYPNRQIKLETTQRNLSTRIMDLVAPVGFGQRGLIVAPPK
AGKTSLLKEIANAITTNHPEAELIVLLIDERPEEVTDIERSVNADVVSSTFDEVPENHVK
VAEIVLERARRLVEHKRDVIILMDSITRLARAFNLVIPPSGRTLSGGIDPAAFHRPKRFF
GSARNIEEGGSLTILATALVDTGSRMDEVIYEEFKGTGNLELHLDRQLAERRIFPALDIR
RSGTRKEELLLEPEQLEKLWAIRKTFSDAPDFAERFLKKLRTTKSNEEFFEKLNEDMKKA
TKGKGLL
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcattgacaatcgctcaattagaaaacatgacgttaaaagagctttacgctctt
gcacgccaatataaaatttcatattatagcaagctaacgaaaaaagaattaatatttgct
attttgaaaacgcgttcagagcaagaaggctatttctttatggaaggcgtacttgaaatt
gtttcgcaagagggctttggcttccttcgaccaataaactactctccaagtaaagaggat
atttatatttctgcatctcaaattcgtcgctttgatcttcgtaatggggacaaggtatct
gggaaggtgcgaccacctaaggagaatgaacgttattacggattattacaagttgatgcc
gtcaatggcgaggatcctgaagttgcaaaggaacgtgtgcatttccctgcactaacaccg
ttatatccaaacagacaaattaaactggaaacaactcagcgtaatttatcaacacgtatt
atggatttagtggcgcctgtaggttttggtcagcgtggattaatcgttgcaccgccgaaa
gcggggaaaacatctttattaaaagaaattgcaaacgctattacgacaaatcatccagaa
gcagagcttattgtcttactgatagatgaacgtcctgaggaagtaactgatattgaacga
tctgtaaatgcagatgttgttagctcaacgtttgatgaagttccagagaatcatgttaaa
gtggcagagatcgttttagaacgtgcacgccgtttagtggaacataaacgtgatgtcatt
atattaatggattccatcacacgtttggcacgtgcatttaaccttgtcattcctccaagt
ggacgtacactttcaggggggatcgatccagctgccttccatagacctaagcgcttcttt
ggatcggctcgaaatattgaagaaggcggtagcttaacgatattagcaactgctttagta
gatactggttcacgtatggacgaggttatttacgaagaatttaaggggacaggtaattta
gagcttcatttagatcgccagttggcagagcgccgaattttccctgcgcttgatattcgc
cgttcaggtacacgtaaggaagagttattgcttgagcctgaacaacttgaaaaactatgg
gcgattcgtaaaacattttcagatgcgcctgattttgcggaacgcttcctgaaaaaactg
cgtacaacaaaatcgaacgaagaattttttgaaaaactgaacgaagatatgaaaaaagca
acaaaaggtaaaggtttattatag
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