Lysinibacillus fusiformis: HR49_23490
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Entry
HR49_23490 CDS
T03655
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lfu
Lysinibacillus fusiformis
Pathway
lfu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lfu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HR49_23490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lfu03400
]
HR49_23490
Enzymes [BR:
lfu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HR49_23490
DNA repair and recombination proteins [BR:
lfu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HR49_23490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
AAA_16
Cas3-like_C_2
RecG_dom3_C
MFD_D3
ISP_coupler
AAA_22
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
AJK89866
LinkDB
All DBs
Position
complement(4769366..4772875)
Genome browser
AA seq
1169 aa
AA seq
DB search
MEVLRQLVSRDKHITSFLQEIQSGQTASQLITGLTGSARPVMVDALFEYVKKPIYIVSPN
LLQAQRMVDELAGLLGEENVHYYPADEFIAADLSVASPELRAERIATLDCLARGEKAVYV
IPVAGLRKIMQPKEHWLHYFLQTTVGDEIEVDAWLQTLVEMGYVRNSMVTTPGEFALRGG
ILDIYPPYLESPIRIELFDTEVDSIRTFSADDQRSIDKLQKIRILPASEVILTKSERQNL
AGRLEKALAASLKKVKKQETKELLYQHIQYDIELLQQGNLPDYVNKYGSLLYDKTAFLGD
YFAQDGIVLFDELGRIQEVMDAWEREEEEWFLSLIEEGKMVHDVKPAFTLKEIVAMLSQQ
KLSFSLFSRTFSGITFNKTTNFSCKPMQQFHGQMALLQSEIERWLLGKFTVLIVARDKER
VKRVQQMLEEYDIHAAIGEPTDAGIYIVDGVLSSGFELPLQRLAIVTEDELFKQQAKKKA
RTQKMTNAERIKSYTEIKPGDYVVHVHHGIGKYIGVETLEVNGTHKDYLHIRYRADDKLY
VPVEQIDLIQKYVASEDREPKLHKLGGAEWKKAKAKVSSAVQDIADDLIKLYAKREAEKG
HAFTPDNDDQRNFEAMFAYEETEDQLRSIVEVKRDMERERPMDRLVCGDVGYGKTEVAIR
AAFKAIQDGKQVAFLVPTTILAQQHYETIRERFQDFAINVGLLSRFRSKKEQTATLKGLK
EGQVDIVIGTHRILSKDLLFQDLGLLIVDEEQRFGVTHKEKIKQLKTNVDVLTLTATPIP
RTLHMSMVGVRDLSVIETPPANRFPVQTYVMEHSGALVREAIEREMARGGQVFYLYNRVE
DMARKVEEIQVLVPEARIGHAHGKMSESELESVILSFLEGDYDVLVTTTIIETGVDIPNV
NTLIVHDADRMGLAQLYQLRGRVGRSNRVAYAYFMYQRDKVLTDVAEQRLQAIKEFTELG
SGFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDLYSQMLQEAIEERQTGVKKEEKPEIEI
LLSVDAYIPDAYIPDGYQKIQMYKRIKAMDQVEEYGEIMEELEDRFGDLPIETERLLRVA
RMKVWGLGAGVVSVKDKQKLITILLSEQGTANVDGSKIIEESMKFERAVGFGMDGMQLKL
TIDERKCGKHQPFDILEELMQIIDQAKKL
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
gtggaagttttacgacagcttgtgtcgagagataaacatattacatcatttttacaggag
attcaaagcggtcaaactgcatcacagcttattacaggtttaactggaagcgcacgtccc
gttatggtcgatgcgttatttgaatatgtaaagaagccgatatacattgtgtctcctaat
ctactgcaggcacaaagaatggtggatgagcttgctggactattaggtgaagaaaatgtt
cactattacccagcggacgaatttattgctgcagacctttctgtggcctctccagaatta
cgagcagagcgaatcgcaacgcttgattgcttagctaggggggagaaggctgtttacgtg
atccccgttgcaggtttgaggaagatcatgcagccgaaggaacattggctacactatttt
ttacaaacaactgtgggcgatgaaattgaagtggatgcatggctacaaacattagttgaa
atgggctatgtccgaaattccatggtgactacacctggcgaatttgccttacgtggaggc
atacttgatatttatccaccgtatttagaatcacctattcggattgaattatttgataca
gaagtagattctataagaacattttcggcagatgaccaacgttctattgataaattacaa
aaaattcgtatacttcctgcttctgaggttattctgacaaaatcagaaagacagaacttg
gcaggtcgtttagaaaaagcgttagccgcaagtctaaagaaagttaaaaagcaggaaaca
aaagaactcctttatcagcatattcagtatgatattgaattgctacaacaaggaaatctt
cctgactatgttaataaatatgggtcattactatatgataaaacggcttttttaggcgac
tattttgcgcaagatggaattgttttatttgatgagcttggacgtatccaagaagttatg
gatgcttgggaacgtgaagaagaggaatggtttttatctttaattgaagaagggaaaatg
gttcatgatgttaaaccagccttcacattaaaggaaatagtggcaatgttgtcgcaacaa
aagctgtccttttcattattttcacgtacattttcgggaataacgtttaataagacgact
aacttttcttgcaagccaatgcaacaatttcacggacaaatggcattgctacaaagtgag
attgaacgctggttacttggcaaatttacagtactcatcgtagctagagataaagagcgt
gtgaaacgtgttcagcaaatgctagaagagtatgatatccatgcagctataggtgagcct
acagatgctggaatttatattgtcgatggagtattgtcgagtggtttcgaattaccgctc
caacgtttggccattgtcactgaggatgaactatttaagcagcaggctaagaaaaaagca
cgtacgcaaaaaatgacgaatgctgaacgcattaaaagctatacggaaattaaacctggt
gattatgttgttcatgttcaccacggaatagggaaatatattggtgtagaaacattagag
gtaaatggaacacataaggattacttgcatattcgatatcgtgcagacgataaattatat
gtacctgtcgagcaaatagacttaattcaaaagtatgtggcatccgaggaccgagaaccg
aagctacataaattaggtggcgcagagtggaaaaaggctaaagctaaggtatcgtcagct
gtacaggatattgcagatgatttaattaaactttatgcaaagcgagaagctgaaaagggg
catgcatttacacctgataatgatgatcaacgtaacttcgaggcaatgtttgcctatgaa
gaaacagaggatcagctgcgttctattgttgaagtaaaaagagatatggaacgtgaacgt
cctatggatcgccttgtctgcggtgacgttggctacggtaaaacagaagtggccattcgt
gccgcatttaaagctattcaagatggcaaacaggttgccttccttgttcctacaaccatt
ttagcgcagcaacattatgaaaccattcgtgaacgctttcaggactttgctattaatgta
gggttgctatcacgcttcaggtcaaagaaagagcaaacagctactttaaaagggttaaaa
gaagggcaagtcgatattgttatcggtacacacagaatcttatcgaaggatttattattc
caagaccttggtttattaattgttgatgaagaacaacgtttcggtgtaacgcataaagaa
aaaattaagcagctaaaaacaaatgtcgatgtgttaacgttaacagcgacacctattccg
agaacgctccatatgtcaatggtaggggtccgagatttatctgttatagaaacaccacca
gccaatcgattcccggttcaaacatatgtgatggaacatagtggggcactagttcgagag
gcaatcgaaagagagatggcacgtggcggacaagtgttttacttatataaccgagtagaa
gatatggctagaaaagttgaggaaattcaagtgctcgttccagaggcacgaataggtcat
gcacatgggaaaatgtcagagtctgaattagaatcagtcatattatcctttttagaagga
gactatgatgtacttgtgacaacgactattattgagaccggtgtagatattcccaatgtt
aatactttaattgtccacgatgctgatcgaatgggcttagctcagctctatcaattgcgt
ggacgcgttgggcgctctaatcgggtagcctatgcttattttatgtaccagcgtgataaa
gtattgacagatgttgctgagcaaagattgcaggctattaaggaatttacggagctgggt
tcaggctttaaaattgctatgagagatttatctattcgaggcgccgggaatttacttgga
gcgcaacaacacggctttattgattcggttggttttgatttgtattcacagatgctccaa
gaggcaattgaagagcgtcaaacaggtgtgaaaaaagaagaaaaacctgagattgaaatt
ttattaagtgtcgatgcgtatattcccgatgcctatatccctgatggataccaaaaaatt
caaatgtataaacgcattaaagcgatggatcaggtggaagagtatggtgaaatcatggag
gaattagaagatcgatttggtgatcttccaattgaaacagagcgtctacttcgtgtagca
cgaatgaaagtatggggattaggtgcgggagtagtctctgtaaaggataagcagaaactt
attacaatcttgctatccgaacagggaacagcaaatgttgatggtagtaaaattattgaa
gagtccatgaaatttgaacgtgctgttggttttggtatggatggcatgcaattaaaacta
accattgatgagcggaagtgcggaaaacatcaaccctttgacattttggaagaactgatg
caaattattgatcaagcaaagaagctataa
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