Fructilactobacillus fructivorans: LF543_01855
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Entry
LF543_01855 CDS
T06838
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lfv
Fructilactobacillus fructivorans
Pathway
lfv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lfv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LF543_01855 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lfv03021
]
LF543_01855 (rpoC)
03400 DNA repair and recombination proteins [BR:
lfv03400
]
LF543_01855 (rpoC)
Enzymes [BR:
lfv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LF543_01855 (rpoC)
Transcription machinery [BR:
lfv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LF543_01855 (rpoC)
DNA repair and recombination proteins [BR:
lfv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LF543_01855 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
IL22
Motif
Other DBs
NCBI-ProteinID:
QFX92386
UniProt:
A0AAE6TVW9
LinkDB
All DBs
Position
388707..392357
Genome browser
AA seq
1216 aa
AA seq
DB search
MVDVNKFKSMQIGLASPETIRSWSYGEVKKPETINYRTLKPEKDGLFDERIFGPTKDWKC
ACGKYKGVRYKGIVCDRCGVEVTRSKARRERMGHIELAAPVTHIWYFKGIPSRMGLVLDM
SPRALEEIIYFASYVVTDPGNTPMEKKQLLSEQEYRDKKREYGNRFHAEIGAEAIRTLLN
DVDIDKEVKELKDTLKKATGQKRTRAVRRLDILEEFATSGNQLSWMVMDAIPVMPPDLRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPGIIVQNEKRMLQEAVDALIDNGR
RGRPVAGPGNRPLKSLSHLLKGKQGRFRQNLLGKRVDYSGRSVIDVGPNLKLSQMGLPVS
MALELFKPFIMHALVQRGLASNIKNAKRQIERQDDAVFEVLPDVIKEHPVLLNRAPTLHR
LGIQAFEPVLVSGKSMRLHPLVCAAYNADFDGDQMAIHVPLSDEAQAESRLLMAAAGHIL
APKDGKPVVTPSQDMVIGNYYLTFEEAGAEGEGMIFNDPDEVELAYRDGKVHWHTRIGIP
ASAFPDKSFTDDQKGKILVTTVGKVIFNGILPKEFTYLNEPTSTNLHGYVPDKYFLKPGE
DIHEHLKNAELVKPFKKGFLSDIIAEVYSQYQVTETSELLDRIKDLGYDKSTKSGLTVGI
SDITDLKEKPEIVANAHKKVDTITKQFRRGLITNQERYERVVNVWNDAKDEIQNKLMKNF
DPQNPIFMMSDSGARGNISNFTQLAGMRGLMASPNGEIMELPITSNFKEGLSVLEMFIST
HGARKGMTDTALKTANSGYLTRRLVDVAQDVIVREEDCGTDRGLVVRAITEGDEMIEPLY
DRILGRNAMKTVKNPKTGKVIVKKNQMIDEDVAQEIVDAGIDSVEIRSAFTCNTAHGVCE
KCYGRNLATGDEVEVGEAVGTIAAQSIGEPGTQLTLRTFHTGGVASSSDITQGLPRVQEI
MEARNPKGKAIISEVTGTVELIEEDPAEGIKEVTVKGKSDTRKYKIPIKARMRVAEGDTV
RRGDPLNEGSIDPKELLKVRDVLSTETYLLTAVQEVYRRQGVEVNDKHAEIMVRQMLRKV
RVMDPGDTDILPGTFMDIDDFKDRNKDAVISGKTPATARPVLLGITKAALETNSFLSAAS
FQETTRVLTDAAIRGKVDPLVGLKENVIIGKLLPAGTGVGKYENIEPEEDGKTSTKGVTS
LSDVEKEMQQKDSSKN
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atggttgatgttaataaattcaaaagtatgcaaattggtttagcttcacctgaaaccatc
cggagttggtcatacggggaagttaaaaagccagagacaattaactatcgaactctaaaa
cctgaaaaagacggtttgtttgatgaaagaattttcggtcctactaaggattggaagtgt
gcctgtggtaagtacaagggtgtcagatacaagggcatcgtttgtgatcgttgtggtgtt
gaagttactcgttctaaagctcgtcgtgaacgaatgggacacatcgaattagccgctccg
gtaacccatatttggtactttaaaggtatcccaagtcgaatgggattagttcttgacatg
agcccaagagctcttgaagaaatcatctactttgcttcatacgttgttactgatccaggt
aacacaccaatggagaagaagcagttgctttcagagcaagaataccgtgacaagaagcgt
gaatatggaaaccgtttccacgctgagattggtgcggaagcgatcagaactttattaaat
gatgttgatatcgataaagaagttaaagaattaaaggatacccttaaaaaggcaactggc
caaaagagaacccgtgcggttcgtcgtttggacattcttgaagaatttgctacttctggt
aatcaattgtcatggatggttatggatgcaattccagttatgccacctgatttacgtcca
atggttcaacttgaaggtggtcgttttgccacttctgatttgaatgatttgtaccgtcgg
gtaattaaccgaaataatcgtttgaaacgtttgctagaccttaatgctcctggcatcatt
gttcaaaacgaaaaacgaatgttgcaagaagctgtcgatgccttgattgataatggtcgt
cgtggtcgtcctgttgctggtcctggtaatcgtccactcaaatctctttctcacttattg
aaagggaagcaaggacgattcagacagaacttgcttggtaaacgtgttgattattcaggt
cgttcagttattgatgttggtcctaatttgaagttaagccaaatgggactgccagtatca
atggctcttgaattgttcaagccatttatcatgcatgctttggttcaacgtggattggct
tcaaacatcaagaatgctaaacgtcagattgaacgtcaagatgacgctgtctttgaagtt
cttcctgatgtaattaaagaacatccagttcttttgaaccgtgcccctaccttgcataga
cttggaattcaagcctttgaacctgtcctagttagtggtaagtcaatgcgtttgcaccca
ttagtttgtgctgcatacaatgctgactttgatggtgaccagatggctattcacgttcct
ctatctgatgaagctcaagccgaatcaagattgttaatggctgctgctggacacattttg
gcacccaaggatggtaagccagttgttactccttcacaggatatggtaattggtaactac
tatctaacatttgaagaagcaggtgccgaaggcgagggaatgatattcaacgacccagac
gaagttgaattagcgtaccgtgatggaaaagttcattggcataccagaattggtattcca
gcaagtgcttttcctgacaagtcatttactgacgatcaaaaaggtaagatcttagtaact
acggttggtaaggtaatctttaatggaattttgccaaaggaattcacttaccttaatgaa
ccaacttcaactaacttgcatggatacgttcctgacaagtacttcttgaagccaggtgag
gatatccatgaacatttaaagaatgctgaattggttaaaccgtttaagaaaggctttcta
agtgacatcattgctgaagtttacagtcaataccaagttacggaaacttccgaactgctt
gatcgaattaaagacttaggttatgacaaatccactaaatctggtttaactgttggtatt
tctgacattactgatttgaaagaaaaaccagaaattgttgctaatgctcataaaaaagtt
gataccattactaaacaattccgtcgtggtttaatcactaaccaagaacgttacgaacga
gttgttaacgtttggaacgatgcaaaagacgaaattcaaaacaaattgatgaaaaacttc
gatcctcagaacccaatctttatgatgagtgattctggtgctcgtggtaacatttctaac
tttactcagttagctggaatgcgtggtttgatggcttctcctaatggtgaaatcatggaa
ctgccaattacttctaactttaaggaaggactttcagtcttggaaatgttcatttcaacc
cacggtgctcgtaaaggtatgaccgatacggctcttaagactgctaactctggttacttg
actcgtcgacttgttgatgttgctcaagacgttattgtcagagaagaagactgtggaact
gatcgtggattggttgttcgtgccattactgaaggtgacgaaatgatcgaaccattgtat
gatcgaattcttggtcgtaatgcaatgaagaccgttaagaaccctaagactggtaaagta
attgttaagaagaatcaaatgattgatgaagatgttgcacaagaaattgtggacgctggc
attgattcagttgagattcgttcggcatttacatgtaacacagctcacggtgtttgtgag
aagtgttacggtcgaaaccttgctactggtgacgaagttgaagttggtgaagctgttggt
accattgccgctcaatcgatcggtgaacctggtactcagttaacccttcgaactttccat
actggtggtgttgcaagtagttctgatattacccaaggacttcctcgtgttcaagaaatc
atggaagctcgtaatcctaaaggtaaagcaatcatcagtgaagttactggtaccgttgaa
ttaattgaagaagatcctgctgaaggaattaaagaagttaccgttaaaggtaagtccgat
acccgaaagtacaagattccaattaaggctcgtatgagagttgctgaaggcgacactgtt
cgtcgtggtgatcctcttaatgaaggttcaattgatcctaaggaattgcttaaagttcgt
gatgtcttgtcaactgaaacttacttgttaactgcggttcaagaagtttatagaagacaa
ggtgttgaagttaacgataagcatgccgaaatcatggtacgacaaatgttacgtaaggtt
cgtgttatggacccaggtgacaccgatatcttacctggtacttttatggacattgatgac
ttcaaagaccgtaataaggacgcagttattagtggtaaaacacctgcaactgctcgtcca
gtcttgcttggaattactaaggctgctcttgaaactaacagtttcttgtcagctgcgtca
ttccaggaaaccactcgtgttcttactgatgctgcaattcgtggtaaggttgatccatta
gttggtttgaaggaaaatgttatcattggtaagttattacctgctggaactggtgttgga
aaatacgaaaacatcgaaccagaagaagatggtaagacttctaccaagggcgttacttct
ttaagtgatgttgaaaaagaaatgcaacaaaaagattctagtaaaaactag
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