Luteimonas fraxinea: LU699_00230
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Entry
LU699_00230 CDS
T09935
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
lfx
Luteimonas fraxinea
Brite
KEGG Orthology (KO) [BR:
lfx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lfx03016
]
LU699_00230 (rnd)
Enzymes [BR:
lfx01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
LU699_00230 (rnd)
Transfer RNA biogenesis [BR:
lfx03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
LU699_00230 (rnd)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
UHH10209
LinkDB
All DBs
Position
48218..49345
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AA seq
375 aa
AA seq
DB search
MSSPNFAWIDDPAILRARLPDAPTRIGLDTEFIRERTFWPQLALVQIAFEGADGIEVLLV
DPLAPGIAEALRPLLADASILKIMHSASEDLVAFGHACGAVPAPLFDTQIAAALSGTGAG
MGYQRLVQETLGVALAKGETRSDWLRRPLSATQLEYAVDDVAHLFALHDVLASKLDALDR
ADWLVEDCARLVATAGNMEGDRWPQLGGRAGLFLDADAQRRLARLLRWRETYARATDRPR
SWILDNELATLLARDPPADTSALQQRLDAHPKAPRKLTSVIWQALTTELPDESEMPLSRG
EEPDRKQLKRLQQAVAERSAEIGLPDGVLASRKWLEALVEGADWPGALSGWRRGQLEPSL
APLLDRAGEPAAGTV
NT seq
1128 nt
NT seq
+upstream
nt +downstream
nt
atgtcatctcccaactttgcctggatcgacgatccggcgatcctgcgggcccgcctgccc
gacgccccgacccgcatcggtctggataccgagttcatccgcgaacgcacgttctggccc
cagctcgcgctggtacagatcgcgttcgagggcgcagacggcatcgaagtgctgctggtc
gatccgctggcgccgggcattgccgaagcgctgcgtccgctgctggccgatgcgtcgatc
ctcaagatcatgcacagcgccagcgaggacctcgtcgcattcggtcacgcctgcggcgcg
gtgccggcgccgctgttcgatacccagatcgccgccgcgctgtcgggcacgggcgcgggc
atgggctaccagcgtctggtgcaggaaacgctgggcgtcgcgctggccaagggcgagacg
cgttcggactggctgcggcgtccgctgtcggcgacccagctcgaatacgcggtcgacgat
gtcgcgcatctgttcgcgctgcacgacgtgctcgccagcaagctcgacgcgctggatcgc
gcggactggctggtcgaggactgcgccaggctcgtcgccaccgccggcaacatggaaggc
gatcgctggccacagctcggcggccgcgccggtctgttcctcgatgccgatgcgcaacgc
aggctcgcccgcctgctgcgctggcgcgaaacctatgcgcgcgccaccgaccgaccgcgc
agctggattctcgacaacgaactcgccaccctgctcgcccgcgatccgcctgcggacacg
tcggcgctgcagcagcggctggatgcgcaccccaaggcgccgcgcaagctgaccagcgtg
atctggcaggcgctgacgaccgagctgccggacgaatccgagatgccgctgtcgcgcggc
gaggaacccgaccgcaagcagctcaagcgtctgcaacaggcggtcgccgaacgcagcgcc
gagatcggactgcctgacggcgtgctggcctcgcgcaagtggctcgaagcgctggtcgaa
ggtgccgactggccgggcgcgttgtcgggctggcgtcgtggtcagctggaaccgtcgctg
gcaccgttgctcgacagggctggcgagcccgcagcggggaccgtataa
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