Luteimonas fraxinea: LU699_00765
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Entry
LU699_00765 CDS
T09935
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lfx
Luteimonas fraxinea
Pathway
lfx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lfx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LU699_00765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lfx03019
]
LU699_00765
03009 Ribosome biogenesis [BR:
lfx03009
]
LU699_00765
Enzymes [BR:
lfx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LU699_00765
Messenger RNA biogenesis [BR:
lfx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LU699_00765
Ribosome biogenesis [BR:
lfx03009
]
Prokaryotic type
rRNA helicases
LU699_00765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Flavi_DEAD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UHH10309
LinkDB
All DBs
Position
162996..164852
Genome browser
AA seq
618 aa
AA seq
DB search
MSAESPITAAETPKFTDLALPETLLRALTAVGYESPSPIQAATIPPLLEGRDLLGQAQTG
TGKTAAFALPVLARIDPAQRKPQALVLAPTRELAIQVAEAFQKYAAFMPGFHVLPIYGGQ
GYAQQLSALKRGVQVIVGTPGRVIDHLERGSLDLSELRALVLDEADEMLRMGFIDDVEAV
LKKTPETRQVALFSATMPSQIKRIAQTYLKNPVEIAIKATTTTAANIRQRYWMVSGVNKL
DALTRILEAEPFDAMIIFARTKLATEELAQKLSARGLSAAAINGDLDQKQRERAIQNLKD
GRLDVLVATDVAARGLDVDRISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFVAPRE
RGMLGAIERATRQKIDQMQLPSVDIVNEARVAKFLEKITTALGSSELGMFRELIERYERE
HNVPAAEIAAALAKVVQGDTPLLLEPPRKPEKPAFEREFVERPGGREASRTAREPREARE
PREARPPRPDTGPRDPDVGMETFRIEVGYVHGVQPGNIVGAIANEADLESKFIGRIDIRD
DYSLVDLPEGMPRELLEHLKKVRVGGQPIRIRRAEDADMTAAPPRAKRPFGAKPPGHKPG
GFKPGGPRKGPPPRRDPR
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atgagcgccgagtcgcccatcaccgctgccgagacccccaagttcaccgatctcgccctg
cccgagaccctgctgcgcgcactgaccgcggtcggttacgagtcgccgtcgccgatccag
gccgcgaccattccgccgctgctcgaaggccgcgatctgctgggccaggcgcagaccggt
accggcaagacggccgcatttgccctgcccgtgctggcgcgcatcgatcccgcgcagcgc
aagccgcaggcgctggtactcgcgccgacgcgcgaactggcgatccaggttgccgaagcc
ttccagaagtacgcggcgttcatgcccggcttccacgtgctgccgatctacggtggtcag
ggctacgcccagcagctgagcgcgctcaagcgcggcgtgcaggtgatcgtcggtacgccc
ggccgcgtgatcgatcacctcgagcgcggctcgctggatctgtccgagctgcgcgccctg
gtgctcgacgaagccgacgaaatgctgcgcatgggcttcatcgacgacgtcgaagccgtg
ctgaagaagacgccggaaacgcgtcaggtcgcgctgttctccgcgacgatgccgagccag
atcaagcgcattgcccagacctatctgaagaatcccgtcgagatcgcgatcaaagcgacc
acgacgaccgccgccaacatccgccagcgctactggatggtcagcggcgtcaacaagctc
gacgcgctgacacgcatcctcgaggcggagcccttcgacgcgatgatcatcttcgcgcgc
accaagttggcgaccgaggaactggcgcagaagctgtcggcgcgtggcctgtcggccgcg
gcgatcaacggcgatctcgaccagaagcagcgcgagcgtgcgatccagaacctcaaggac
ggccgtctcgacgtgctggtggcgaccgacgtcgccgcgcgcggcctggacgtcgaccgc
atcagccacgtgctgaactacgacattccctacgacaccgaaagctacgtgcaccgcatc
ggccgcaccggccgcgcgggtcgcagtggcgaggcgatcctgttcgtggccccgcgcgag
cgcggcatgctcggcgcgatcgaacgtgcgacgcggcagaagatcgatcagatgcagctg
ccgagcgtcgatatcgtcaacgaagcgcgtgtggcgaagttcctcgagaagatcaccacc
gcgctgggcagcagcgagctgggcatgttccgcgagctgatcgaacgctacgagcgcgag
cacaacgtgccggcggccgaaatcgccgctgcgctggccaaggtggtccagggcgacacg
ccgctgctgctggagccgccacgcaagccggagaagcctgcgttcgagcgcgagttcgtc
gagcgtccgggtggccgcgaggcctcgcgtaccgcgcgcgaaccgcgtgaagcccgcgag
ccgcgcgaagcgcgtccgccgcgtcccgacaccggtccgcgtgatccggacgtcggcatg
gagaccttccgcattgaagtcggttacgtgcacggcgtgcagccgggcaacatcgtcggc
gcgatcgccaacgaagcggatctcgagagcaagttcatcggccgcatcgacatccgcgac
gactacagcctggtcgacctgccggaaggcatgccgcgcgaactgctggagcacctgaag
aaggtccgcgtcggcggccagccgatccgcatccgccgcgccgaagacgccgacatgacc
gcggccccgccgcgcgccaagcgccccttcggtgcgaagccgccgggtcacaagccgggc
ggtttcaagccgggcggcccgcgcaagggtccgccgccgcgtcgcgatccgcgctga
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