Luteimonas fraxinea: LU699_01735
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Entry
LU699_01735 CDS
T09935
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
lfx
Luteimonas fraxinea
Pathway
lfx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lfx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LU699_01735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lfx03019
]
LU699_01735
03009 Ribosome biogenesis [BR:
lfx03009
]
LU699_01735
Enzymes [BR:
lfx01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LU699_01735
Messenger RNA biogenesis [BR:
lfx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LU699_01735
Ribosome biogenesis [BR:
lfx03009
]
Prokaryotic type
rRNA processing factors
LU699_01735
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
zf-C2H2_FBX41
Motif
Other DBs
NCBI-ProteinID:
UHH10482
LinkDB
All DBs
Position
401425..404694
Genome browser
AA seq
1089 aa
AA seq
DB search
MKRMLINATQAEELRVAIVDGQSLYDIDIEQPSREQKKSNIYKGRITRIEPSLEAAFVEY
GAARHGFLPLKEVSRDYFQAGADPNKGVIKELLREGQEVVVQVDKEERGNKGAALTTFIS
LAGRYMVLMPNSPTAGGVSRRIEGEDRAELKKAMDALDIPDEMGVIIRTAGVGRDAEELQ
WDLDYLLSIWRAIAEAALSKPSPFLIYQESRLITRALRDYMRADIAEILVDTPEMYAEAK
EFVEQVMPHNLRKLKHYTDDVPLFNRYQIESQIESAYERTVRLPSGGALVIDQTEALTAI
DVNSARATKGGDIEETAFNTNLEAAEEVARQLRLRDLGGLVVIDFIDMSSNKHQRDVENK
LQNALKYDRARVQQNKISKFGLLEMSRQRLRASLGESSQIVCPRCEGHGRMRSIESLSLS
IIRVAEEHAMKDNTGQVLVQAPVEIANYLLNEKRSALEEIEKRHAAPIIIVADEQLHTPH
YEVSRIRENELGEETARPSYQRGTPRRVATIALSKNNLNVPPPAVTNVRPTQPAPVREPK
PEAVAPAPAPVPQPAPAPVERVATGGVMGWLKTLFAPPAPAKPAAPAQTERAPRADGGPR
GENRGDRNDRGRNGQRRDRRGGRQGQGGSNPSPVANEAKQAAPAQQARDDTQREARREPA
AVADAGARKERQQERRQRQKQRGPRQKTEGDVTEAQAAIAVAAPVAAASIDAPRATQPDI
EQTAPATAIDSAPAAVATHATPRPETAPVHTDTDADDSDDTSASDADGNSESGDDDGSNG
RRRRGRRGGRRRRRGKAGDGTAGDETSLDSDDAGDDDTAVATGHGQPEFDFDDLPAPAAQ
ATSEPRAPAQQDTRPAVAAAAVAASAVVQPSEPAVETPAPAQPVDTWTATPAPVEAEAPQ
TPVERAAPVADAPVLPPVVESPVVADVTPAQDTAPAKIAADDVANAARSVAPVEPARSFD
PAPQAEPNVSDEAPVAAAPQIDATPSIDTASAPAPFDETPAAPRAPVAQGLFDAPAPAAT
QPVESPSFEPETTGVAPGDAALTDEEVTTPVEPAVADAASVESDDADSDDEPESDYRTDP
RLRSRPNDA
NT seq
3270 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcatgctgatcaacgcgacgcaggcagaagaactgcgcgtcgccatcgttgat
ggtcagtccctgtacgacatcgacatcgaacagccgtccagggaacagaagaagtccaac
atctacaagggtcgtatcacccgcatcgagccgtcgctcgaagccgcgttcgtcgagtac
ggcgccgcccgccacggcttcctgccgctgaaggaagtctcccgcgattacttccaggcc
ggtgccgacccgaacaagggcgtcatcaaggaactcctgcgcgaaggccaggaagtcgtg
gtccaggtcgacaaggaagagcgcggcaacaagggcgctgccctgaccacgttcatctcg
ctggccggccgctacatggtgctgatgcccaattcgccgaccgccggtggcgtgtcgcgc
cggatcgaaggcgaagaccgcgccgagctgaagaaggcgatggacgcgctcgacatcccc
gacgagatgggcgtgatcatccgcaccgccggtgtcggccgtgacgccgaagagctgcag
tgggatctcgactacctgctgagcatctggcgcgcgatcgccgaagccgcgctgagcaag
ccctcgccgttcctgatctaccaggaatcgcgtctgatcacccgtgcgctgcgcgactac
atgcgcgccgatatcgccgaaatcctcgtcgatacgccggagatgtacgccgaggcgaag
gaattcgtcgagcaggtgatgccgcacaacctgcgcaagctcaagcattacaccgacgat
gtgccgctgttcaaccgctatcagatcgagtcgcagatcgagagcgcctacgagcgcacc
gtgcgtctgccgtccggcggcgcgctggtcatcgaccagaccgaagccctgactgcgatc
gacgtgaactccgcccgcgccaccaagggcggcgacatcgaagagaccgcgttcaacacc
aacctggaagcagccgaggaagtggcccgccagctgcgcctgcgcgatctcggcggcctg
gtggtcatcgacttcatcgacatgtcgtcgaacaagcaccagcgcgacgtcgagaacaag
ctgcagaacgcgctcaagtacgaccgcgcccgcgtgcagcagaacaagatctcgaagttc
ggtctgctggagatgagccgtcagcgcctgcgcgcgtcgctgggcgagtcgagccagatc
gtctgcccgcgctgcgaaggccatggccgcatgcgcagcatcgaatcgctgtcgctgtcg
atcatccgcgtcgccgaagagcacgcgatgaaggacaacaccggacaggtgctggtgcag
gccccggtcgagattgcgaactacctgctcaacgagaagcgcagcgcgcttgaggaaatc
gaaaagcgccacgccgcgccgatcatcatcgtcgccgacgagcagttgcacacgccgcac
tacgaggtctcgcgcatccgcgagaacgaactcggtgaggaaaccgcgcgtccgagctac
cagcgcggcacgccgcgtcgcgtcgcgacgatcgcgctgagcaagaacaacctcaacgtg
ccgccgccggccgtcaccaatgtgcgtccgacgcagcccgcgccggttcgcgagccgaag
ccggaagccgttgcgcccgcaccggcgcccgtgccgcagcccgcacccgcaccggtcgaa
cgggtcgccaccggcggcgtcatgggctggctcaagacgctgttcgcaccccctgccccg
gccaagcccgccgcacccgcgcagaccgagcgcgcgccgcgtgccgatggcggtccgcgc
ggcgagaaccgcggcgatcgcaacgatcgtggccgcaacggccagcgccgcgaccgtcgc
ggtggacgtcagggacagggcggatcgaacccgtcgcctgtcgcgaacgaagccaagcag
gcggcgcccgcgcagcaggcccgcgacgacacacagcgtgaagcgcgtcgcgagcccgcg
gccgttgccgatgccggcgcccgcaaggagcgtcagcaggaacgtcgccagcgccagaag
cagcgcggcccgcgccagaagaccgaaggcgacgtgaccgaggcccaggcggcgatcgcc
gtcgccgcgccggttgcagccgcatcgatcgacgcgccccgcgcaacccagcccgacatc
gagcagaccgcgccggcaacggcgatcgacagcgcacctgctgccgtcgccacgcacgca
acgccgcgccctgaaaccgcaccagtgcacaccgatacggatgcggacgacagcgacgat
acgagcgcgtccgatgccgatggcaacagcgagtccggtgacgatgacggcagcaacggc
cgtcgacgtcgcggtcgtcgtggtggccgtcgtcgtcgtcgtggcaaggccggtgacggc
acggctggcgacgagacctcgctggacagcgatgacgcaggcgacgacgacaccgccgtg
gccaccggtcatggccagcccgagttcgacttcgacgatctgcccgcacctgcggcgcag
gcgacgagcgaaccgcgcgctcctgcgcagcaggacacgcgtccggccgtcgcggcggct
gcggtcgccgcgagcgccgtggtgcagccgagcgagccggcagtcgaaacgcctgcgcct
gcgcagccggtcgacacctggaccgcgacgcctgctccggtcgaagccgaggcgccgcag
accccggtcgaacgcgcagcacctgtggccgatgcacccgtgctgccgccggtggtcgag
tcgccggtcgtcgcagacgtgacgccggcgcaggacaccgcgcctgccaagatcgccgca
gacgacgtcgcgaatgcggcccgttccgtggcgccggtggagccggcgcgcagctttgat
cctgcgccgcaggccgagccgaacgtcagcgacgaagcaccggttgctgccgcaccgcag
atcgacgccacgccgtcgatcgacacggccagcgcaccggcaccgttcgacgagacgccg
gccgcgccgcgtgcaccggtggcccagggcctgttcgacgcgcctgcaccggctgcaacg
cagcctgtcgagtcgccgtccttcgagcccgagacgaccggcgttgcgccgggcgatgcg
gcgctgacggatgaagaggtcacgacgccggtcgagcccgcggtcgcggatgcagcgtcg
gtcgaatccgacgacgcagacagcgacgatgagcccgagtcggactaccgtaccgatccg
cgcctgcggtcacgtccgaacgacgcttga
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