Luteimonas fraxinea: LU699_02040
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Entry
LU699_02040 CDS
T09935
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
lfx
Luteimonas fraxinea
Pathway
lfx03030
DNA replication
lfx03430
Mismatch repair
lfx03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lfx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LU699_02040 (dnaE)
03430 Mismatch repair
LU699_02040 (dnaE)
03440 Homologous recombination
LU699_02040 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lfx03032
]
LU699_02040 (dnaE)
03400 DNA repair and recombination proteins [BR:
lfx03400
]
LU699_02040 (dnaE)
Enzymes [BR:
lfx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LU699_02040 (dnaE)
DNA replication proteins [BR:
lfx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LU699_02040 (dnaE)
DNA repair and recombination proteins [BR:
lfx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LU699_02040 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
UHH10536
LinkDB
All DBs
Position
461458..464988
Genome browser
AA seq
1176 aa
AA seq
DB search
MSARFAHLHVHSEYSLSDSTIRIKELVKRCAALDQPSVALTDRNNLFALVKFYKAAESAG
IKPVMGADISLAEGDEPASTLTLLCRDHDGYLSLSRLLTRAWMEGHRTDGVVVRPEWLRE
ANTGLFAIAGRHGPAAKLLAGGRDDLARQWYAQWREVFDDRLFLQLTRCGFDDEAVHNAL
ALQVSSDLSLPVIAGNDVRFLDAEGFDAHEARVCISTGRVLDDPRRPKLYTREQYLKSAD
EMAALFSDVPDAIDNTLALSQRCNLELRLGTYYLPAYPVPDAHTLDTWIRSQSHDGLVER
LEKYPVAAGHTRESYIERLDVELDVICKMGFPGYFLIVSDFIKWAKEHDIPVGPGRGSGA
GSLVAWALKITDIDPLPYDLLFERFLNPERVSMPDFDIDFCMDRRDEVIDYVAAKYGRDR
VSQIITYGTMAAKAVVRDTGRVLGYPYGMVDGISKLVPPTLGIGLEDALGRTDKSRSDDA
WRSDELIARYNDEDDVHDLLDLALQLEDLTRNAGKHAGGVVIAPSPLSDFCPLFAEHDEG
GRGRNPVTQFDKDDVETIGLVKFDFLGLRTLTIIDWAVKAINARRATADEAPLDIAALPL
DDIESYKLFARGDTVAVFQFESRGMRELLKRAQPDTFEDIIALAALFRPGPLGSGMDKEW
VDRKHGRTDVSYPHPSLEPVLSPTYGVIVYQEQVMQIAQVLAGYSLGGADMLRRAMGKKK
PEEMAKERAKFEAGAAANAVDPVQATQIFDLMEKFAEYGFNKSHSAAYALVAYQTAWLKV
HYPAEFMAAVLSSDMDNTDKVTGFLTEARTMGLDVLPPDVNASAYMFEAIDPQTIRYGLG
AVKGVGRGACENIVEARVHAGVFPDLLDFCRRVDSSRLNKRTLEALINAGALDALGKNRA
SLMLQLPEALKATDQLARNRSAGIVDMFGSSVGDSDALHIDLPECEEWPLKQKLDGERDT
LGHYLSGHPLDPYRDELQALVGTDLGQLDSLWAARDQKGGGNSWRPETQVIIAGQVGAMR
KRGDSQAFVLLEDGRGRLECGFFADASSEYAHLLTRDRILIVEGGLREDEFSGGFALRVK
RCWDFHTVCPEHARRLSLRLDLRVPGTLARVEQVLAQHRPGKTPLRLDLLLEAGSAGTLD
VNGTHSVRVDAELPGTLRAQAGVRIARLDIAKPWAN
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcgcgcttcgcccacctccacgtccacagcgaatactcgctctccgattcgacg
atccggatcaaggagctggtgaaacgctgcgccgcgctcgaccagccgtcggtcgcgctg
accgaccgcaacaacctgttcgcgctggtgaagttctacaaggccgccgagagcgccggc
atcaagccggtgatgggcgccgacatctcgctggccgaaggcgacgaaccggcctcgacg
ctgaccctgctgtgccgcgaccacgacggctatctgtcgctgtcgcgcctgctcacgcgc
gcgtggatggaaggccatcgcaccgatggtgtcgtcgtgcgcccggagtggctgcgcgag
gcgaacactggcctgttcgcgatcgccggtcgtcatggcccggcggcgaagctgctggcc
ggtggccgcgacgatctcgccaggcagtggtacgcgcagtggcgcgaggtcttcgacgat
cgcctgttcctgcagctcacccgctgcggtttcgacgacgaagccgtgcacaacgcgctc
gcgctgcaggtgtcgtccgatctctcgctgccggtgatcgccggcaacgacgtgcgcttc
ctcgacgcggaaggcttcgatgcgcacgaagcgcgcgtgtgcatctcgaccggccgcgtg
ctcgacgatccgcgtcgtccgaagctctacacgcgcgagcaatatctgaagtcggccgac
gagatggccgcgctgttttccgatgtgcccgatgcgatcgacaacacgctggcgctctcg
cagcgctgcaatctcgaactgcgcctgggcacctactacctgcctgcatatccggtaccg
gacgcgcacacgctcgacacctggatccgctcgcagtcgcacgacggtctggtcgagcgc
ctggagaagtatccggtcgcggccggccacacgcgcgagagctacatcgaacgtctcgat
gtcgaactcgacgtcatctgcaagatggggttcccgggctacttcctgatcgtctcggac
ttcatcaagtgggccaaggaacacgacatccccgtcggcccgggccgtggttccggcgcc
ggctcgctggtcgcatgggcgctgaagatcaccgacatcgatccgctgccctacgacctg
ctgttcgagcgcttcctcaatcccgaacgcgtgtcgatgcccgacttcgacatcgacttc
tgcatggaccgccgcgacgaggtcatcgactacgtcgccgcgaaatacggccgcgaccgc
gtcagccagatcatcacctacggcaccatggctgcgaaggccgtggtgcgcgataccggc
cgcgtgctcggctatccctacggcatggtcgacggcatctccaagttggtgccgccgacg
ctgggcatcggtctggaggacgcactcggacgcaccgacaagtcgcgcagcgatgatgcc
tggcgctccgacgaactgatcgcgcgctacaacgacgaggacgacgtccacgatctgctc
gatctcgccctgcagctcgaggatctgacccgcaacgccggcaagcacgccggcggcgtg
gtgatcgcgccgtcgccgctcagcgatttctgcccgctgttcgccgaacacgacgaaggc
ggccgcggccgcaatccggtcacccagttcgacaaggacgacgtcgagacgatcggcctg
gtgaagttcgacttcctcggcctgcgtacgctgacgatcatcgactgggcggtgaaggcg
atcaacgcgcgccgcgccaccgcggacgaagcgccgctcgacatcgccgcgctgccgctc
gacgacatcgaaagctacaagctgttcgcgcgcggcgacacggtggcggtgttccagttc
gaatcgcgcggcatgcgcgagctgctcaagcgcgcgcagcccgatacgttcgaggacatc
atcgcgctcgccgcgctgttccgtcccggcccgctgggttcggggatggacaaggaatgg
gtcgaccgcaagcacggccgcaccgacgtgagctacccgcatccgtcgctggagccggtg
ctgtcaccgacctacggcgtcatcgtctaccaggaacaggtgatgcagatcgcccaggtc
ctggccggctattcgctgggcggcgcggacatgctgcgccgcgcgatgggcaagaagaag
cccgaggagatggccaaggagcgcgccaagttcgaagccggcgcggcggcgaacgcggtg
gacccggtccaggccacgcagatcttcgacctgatggagaagtttgccgagtacggcttc
aacaagtcgcactcggccgcctatgcgctggtcgcctaccagacggcgtggctgaaggtg
cattacccggccgaattcatggccgcggtgctgtcgtcggacatggacaataccgacaag
gtgaccggcttcctgaccgaagcgcggacgatgggcttggacgtgctgccgccggacgtc
aacgcgtcggcctacatgttcgaggcgatcgatccgcagaccatccgttacggactcggc
gcggtgaagggcgtcggccgtggggcctgcgagaacatcgtcgaggcacgtgtgcatgcg
ggcgtgttccccgacctgctggatttctgccgccgcgtcgattcctcgcgtctcaacaag
cgcacgctcgaagcgctgatcaatgccggtgcgctcgacgcgctcggcaagaaccgcgcc
tcgctgatgctgcagttgcccgaggcgctgaaagcgaccgaccagctcgcgcgcaaccgc
agcgccggcatcgtcgacatgttcggcagcagcgtcggcgacagcgatgcgctgcacatc
gatctgcccgagtgcgaggaatggccgctcaagcagaagctcgacggcgaacgcgacacg
ctgggccattacctcagcggccatccgctcgatccctaccgcgacgaactacaggcactg
gtgggcaccgatctgggccagctcgacagcctgtgggcggcgcgcgaccagaagggcggc
ggcaacagctggcgcccggaaacccaggtcatcatcgcgggccaggtcggcgcgatgcgc
aagcgcggtgactcgcaggccttcgtgctgctggaagacggccgcggccggctcgagtgc
ggcttcttcgccgatgccagcagcgagtacgcgcatctgctgacgcgcgaccgcatcctg
atcgtcgaaggcggcctgcgcgaggacgagttcagtggcggcttcgcgctgcgggtgaag
cgttgctgggatttccacaccgtctgcccggagcacgcgcgccggctgtcgctgcgcctg
gatctgcgcgtgcccggcacgctggcacgcgtggaacaggtgctggcccagcatcgcccc
ggcaagaccccgctgcgtctggacctgctgctggaggccggcagcgccggcaccttggac
gtcaacggcacccattccgtgcgcgtggacgccgaactgcccggcaccctgcgcgcccag
gccggcgtgcgcatcgcaaggctcgatatcgccaagccctgggccaactga
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