Luteimonas fraxinea: LU699_03795
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Entry
LU699_03795 CDS
T09935
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lfx
Luteimonas fraxinea
Pathway
lfx03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lfx00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LU699_03795 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lfx03021
]
LU699_03795 (rpoC)
03400 DNA repair and recombination proteins [BR:
lfx03400
]
LU699_03795 (rpoC)
Enzymes [BR:
lfx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LU699_03795 (rpoC)
Transcription machinery [BR:
lfx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LU699_03795 (rpoC)
DNA repair and recombination proteins [BR:
lfx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LU699_03795 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
UHH10867
LinkDB
All DBs
Position
complement(862016..866290)
Genome browser
AA seq
1424 aa
AA seq
DB search
MKDLLNLFNQPRQIPDFDAIKIALASPDLIRSWSFGEVKKPETINYRTFKPERDGLFCAA
IFGPIKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERILYFEAFVVTEPGLTPLERSQLLNEEQYMQMRQEHGDDFDAAM
GAEAVYDLLRTIDLQAEMVRLKEEISATGSETKLKRLTKRIKLVEAFIESGNRPEWMIMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLELNAPDIIVRNEKRMLQ
ESVDALMDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LRLHECGLPKKMALELFKPFIFAKLQRRGLATTIKAAKKLVEREEAEVWDILEEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA
RALMMASNNILSPANGEPIIVPSQDVVLGLYYMTRALENIPGEGMIFANIAEVRRAFDNK
AAGLHAKIKVRINQTVISEDGSREKVTSIVETSVGRALLLEIMPDGLPFELANVELNKKN
ISRLINACYRRLGLKDTVVFADKLMYTGFGNATRAGVSIGINDMTIPTEKAGILVEAEAE
VLEIQQQYQSGLVTAGERYNKVVDIWSRTNERIAKAMMDTIGTEKVLNAKGETIDQKSMN
SLYIMADSGARGSQAQIRQLAGMRGLMAKPDGSIIETPIIANFREGLNVQEYFNSTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVITEVDCGTMDGLTMTPIVEGGDVVEPLRDRVL
GRVVAEDVFLPGNDEDPIVTRNTLLDEQWVQRLEEAGVQSIQVRSTITCEAGFGVCASCY
GRDLGRGHLVNQGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRAAAIDNVTVKTTGSIK
FNNLKHVKHESGNLVAVSRSGELSVLDGHGRERERYKLPYGATITVNDGDAIKAGQTVSN
WDPHNHPIVSEVAGFIRFVDFVDGITVIEKTDDLTGLASREITDPKRRGSMGKDLRPIVR
IVDAKGNDLNIPGTDLPAQYLLPPRSIVNLQDGNAVGVGDVVTKVPQEASKTRDITGGLP
RVADLFEARKPKDQAILAEISGIVSFGKDTKGKQRLIIKGTDGVDHEELIPKYRQIIVFE
GEHVEKGETVVDGEPGPQDILRLKGVEELASYLTKEIQDVYRLQGVKINDKHIEVIVRQM
LRKVEITDQGDSRFLNGEQVERQRVIEDNVKHLAKNELPAKFDPVLLGITKASLATESFI
SAASFQETTRVLTEAAVRGTRDSLRGLKENVIVGRLIPAGTGLAYHARRRRAASGLTDSE
MDALSGSSTTKADAEVVAAPAAPEQVMLEDAPVTPTADNDGEAR
NT seq
4275 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacctgctcaatctcttcaaccagccgcgccagattccggacttcgatgcgatc
aagatcgcgctcgccagcccggacctgatccgttcgtggtcgttcggcgaagtgaagaag
cccgagacgatcaactaccgcacgttcaagcccgagcgtgacggcctgttctgcgccgcg
atcttcggtccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcatgaagcac
cgtggcgtggtctgcgaaaagtgcggcaccgaagtcacgctggccaaggtgcgccgcgag
cgcatgggtcacatcgacctggcgtcgccggtcgcgcacatctggttcctcaagtcgctg
ccgtcgcgcatcggcctgatgctggacatgaccctgcgtgacatcgaacgcatcctgtac
ttcgaagcgttcgtcgtgaccgagccgggtctgaccccgctcgagcgcagccagctgctc
aacgaagagcagtacatgcagatgcgccaggaacacggcgacgacttcgacgccgcgatg
ggcgccgaggcggtctacgacctgctgcgcacgatcgacctgcaggccgagatggtccgt
ctgaaggaagagatctccgccacgggttcggaaaccaagctcaagcgcctcaccaagcgc
atcaagctggtcgaggccttcatcgagtcgggcaaccgtcccgagtggatgatcatgacc
gtgctgccggtgctgccgccggacctgcgtccgctggtcccgctggacggcggacgcttc
gcgacctcggatctcaacgatctgtaccgccgcgtcatcaaccgcaacaaccgcctgcgt
cgcctgctcgaactcaatgcgcccgacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaatcggtcgatgcgctgatggacaacggccgtcgcggccgtgcgatcaccggtaccaac
aagcgcccgctcaagtcgctcgccgacatgatcaagggcaagcagggtcgcttccgccag
aacctgcttggcaagcgcgtcgactactcgggccgttcggtcatcgtggtcggcccgacg
ctgcgtctgcacgagtgcggtctgccgaagaagatggcgctcgagctgttcaagcccttc
atcttcgccaagctgcagcgccgtggcctcgccacgacgatcaaggccgccaagaagctc
gtcgagcgcgaagaggccgaggtgtgggacatcctcgaagaggtgatccgcgagcatccc
gtgctgctcaaccgcgcgccgacgctgcatcgtctgggcatccaggcgttcgagccggtg
ctgatcgaaggcaaggcgatccagctgcatccgctggtgtgtaccgcgttcaacgccgac
ttcgacggtgaccagatggcggtccacgtgccgctttcgctggaagcccagctcgaagcg
cgtgcgctgatgatggcgtcgaacaacatcctgtcgcccgccaacggcgagccgatcatc
gtgccgtcgcaggacgtcgtgctcggtctgtactacatgacgcgcgctctggagaacatc
ccgggcgagggcatgatcttcgcgaacatcgccgaagtgcgtcgtgcgttcgacaacaag
gccgccggcctccacgccaagatcaaggtccgcatcaaccagaccgtgatcagcgaggac
ggttcgcgcgagaaggtgacctcgatcgtcgagacgagcgtgggtcgtgcgctgctgctc
gaaatcatgcccgacggcttgccgttcgagctggccaacgtcgagctcaacaagaagaac
atctcgcgcctgatcaacgcctgctaccgccgtctgggtctcaaggacacggtcgtgttc
gccgacaagctgatgtacaccggcttcggcaacgcgacgcgtgcgggcgtgtcgatcggt
atcaacgacatgaccatcccgaccgagaaggccggcatcctggtcgaggccgaagccgag
gtgctggaaatccagcagcagtaccagtcgggtctggtcaccgccggcgagcgctacaac
aaggtcgtcgacatctggtcgcgtacgaacgagcgcatcgccaaggcgatgatggacacg
atcggtaccgagaaggtcctcaacgccaagggcgaaaccatcgaccagaagtcgatgaac
tcgctctacatcatggccgactcaggtgcccgtggttcgcaggcgcagatccgtcagctg
gccggtatgcgcggcctgatggccaagccggacggctcgatcatcgagacgccgatcatc
gcgaacttccgcgaaggtctgaacgtccaggaatacttcaactccacccacggtgcccgt
aagggtctggccgataccgcgctcaagaccgcgaactccggttacctgacccgtcgtctc
gtcgacgtggcgcaggacgtggtgatcaccgaagtcgactgcggcacgatggacggtctc
accatgaccccgatcgtcgaaggcggcgatgtggtcgagccgttgcgcgaccgcgtgctg
ggtcgtgtcgtggccgaggacgtgttcctgccgggcaacgacgaggatccgatcgtcacc
cgcaacactctgctcgacgagcagtgggtgcagcgcctcgaagaggccggtgtgcagtcg
atccaggtccgttcgacgatcacctgcgaagccggcttcggcgtctgcgccagctgctac
ggccgtgacctcggccgcggccacctggtcaaccagggcgaggccgtgggcgtcgtcgct
gcgcagtcgatcggcgaacccggtacgcagctgaccatgcgtacgttccacatcggtggt
gcggcgtcgcgtgcggccgccatcgacaacgtgacggtcaagaccaccggctcgatcaag
ttcaacaacctcaagcacgtcaagcacgagagcggcaacctcgtcgcggtctcgcgttcg
ggcgaactgtcggtgctcgacggccacggccgcgagcgcgagcgttacaagctgccctac
ggcgcgaccatcaccgtcaacgatggcgatgcgatcaaggccggccagaccgtgtcgaac
tgggatccgcataaccacccgatcgtctcggaagtcgcaggcttcatccgtttcgttgac
tttgtcgacggcatcaccgtcatcgagaagaccgacgatctgaccggcctcgcttcgcgc
gagatcaccgatccgaagcgtcgtggttcgatgggcaaggatctgcgtccgatcgtccgc
atcgtcgatgcgaagggcaacgacctcaacatcccgggcaccgacctgccggcgcagtac
ctgctgccgccgcgctcgatcgtcaacctgcaggacggcaatgccgtcggcgtgggcgac
gtggtgaccaaggtgccccaggaagcgtcgaagacccgcgacatcaccggtggtctgccg
cgcgtggccgatctgttcgaagcgcgcaagccgaaggaccaggcgatcctcgccgagatc
tccggcatcgtcagcttcggcaaggacaccaagggcaagcagcgcctgatcatcaagggc
accgacggtgtcgatcacgaagagctgattccgaagtaccgccagatcatcgtgttcgaa
ggtgagcacgtggagaagggcgagacggtcgtcgacggcgagccgggtccgcaggacatc
ctgcgtttgaagggtgtcgaggaacttgcgtcctacctgaccaaggaaatccaggacgtc
tatcgcctgcagggcgtgaagatcaacgacaagcacatcgaggtgatcgttcgccagatg
ctgcgcaaggtcgagatcaccgaccagggcgacagccgcttcctcaacggtgagcaggtc
gagcgtcagcgcgtgatcgaggacaacgtcaagcatctcgccaagaacgagctgccggcg
aagttcgatccggtgctgctgggtatcaccaaggcatcgctggccaccgagtcgttcatc
tcggccgcgtcgttccaggagaccacccgcgtgctcaccgaggcggccgttcgcggcacg
cgcgacagcctgcgcggtctgaaggaaaacgtgatcgtgggtcgtctgatcccggccggt
accggtctggcgtaccacgcccgtcgtcgtcgcgccgcctccggcctgaccgactcggaa
atggacgcactgtcgggcagcagcacgaccaaggccgatgccgaagtcgttgccgcaccg
gctgcgccggagcaggtgatgctcgaagatgcaccggtgacgccgacggctgacaacgac
ggcgaagcacgctaa
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integrated database retrieval system
